rs221359335 SNP Detail

Summary

• ID
  rs221359335
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136376475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCTCCCC ATCCCCCGCC
  CCGTCCCCAA GAATAAAAGA AGAACCGGGA GGCGTGCTCA GAAAATAAAT AAATAACCAG
  CACACACGCG CAGCCCGGAG CGAGGCGGCG GGGCTGGCGG CGGCGGAGGA GGAGTGAAGG
  CGGCGGCGGC GGAGGAGGGA CGCGCGGAGC CGGCAGTAAC TTTCGAGCCA GCCCAGAGCC
  M
  AGAGCTCCAG CCGAGCGGTT TGCAGCGCGG CGGCGGCGGC GCTGAGTGTC TGGCCCGCCG
  GTGCGGTCGG GGTGTGCAGT CGGACGGGAC GAGCAGCGCG TCGCTGTCCC CCCCTCCCGG
  TGGCTGGAGA TGTCCGAGCC CAAGGCGATT GATCCCAAGT TGTCGACGAC CGACAGGGTG
  GTGAAAGGTA AGCGCAGCGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359865503	MGP_WTSI_3_136333678	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221359335					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359865503	MGP_WTSI_3_136333678	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136376475 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13862	CpG island 13862			within coordinates
Gm56786	predicted gene, 56786			770 bp upstream
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform			mRNA-UTR
				Noncoding-Transcript-Variant
Rr398056	regulatory region 398056			564 bp downstream
Rr398057	regulatory region 398057			88 bp upstream
Rr585834	regulatory region 585834			802 bp distal
Rr585835	regulatory region 585835			1400 bp distal
Rr585836	regulatory region 585836			580 bp distal
Rr585837	regulatory region 585837			within coordinates
Rr585838	regulatory region 585838			67 bp proximal
Tssr31863	transcription start site region 31863			528 bp downstream
Tssr31864	transcription start site region 31864			507 bp downstream
Tssr31865	transcription start site region 31865			485 bp downstream
Tssr31866	transcription start site region 31866			450 bp downstream
Tssr31867	transcription start site region 31867			407 bp downstream
Tssr31868	transcription start site region 31868			288 bp downstream
Tssr31869	transcription start site region 31869			275 bp downstream
Tssr31870	transcription start site region 31870			240 bp downstream
Tssr31871	transcription start site region 31871			187 bp downstream
Tssr31872	transcription start site region 31872			131 bp downstream
Tssr31873	transcription start site region 31873			112 bp downstream
Tssr31874	transcription start site region 31874			within coordinates
Tssr31875	transcription start site region 31875			101 bp upstream
Tssr31876	transcription start site region 31876			153 bp upstream
Tssr35849	transcription start site region 35849			777 bp upstream