rs221368013 SNP Detail

Summary

• ID
  rs221368013
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131196045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCACCGCT CGCAGCCGGT
  GCTCGCACGC CGGGGGCGCT CGCTGGGCGC AGAGGACCCG GGGGACCGGG CCCGAGAGCT
  GCAAACTTTG CGCGGGTCTC GCCCGCATAG GTAGCCGCTC CGCCCCAGGC CGCAGTCCGG
  GCGCCGCAGC GGGCCGGGCT CCGGGCGGCT CCGGCGGCGC CGAGGGCGGG GTCTCCGGCC
  S
  GCGGAGCCCG GGGCAGCGCG CAGCTCTGTT TACCGCGGGC CCGCCCTCCT CCCCAGCCCG
  CGCCCTGACA TCATTCATTC TCGCACTCTC GCCAGCCCTC TCCTGCTCCC AGCCGTGACT
  CACCCCGGGC CCGAGGCTCC CGCGGGCTCC CGCGACTCCC GGCGACCGAG TCTCTCCGGA
  CGCCTAGCCG AGCTCGAAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359739303	MGP_WTSI_3_131153248	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221368013					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359739303	MGP_WTSI_3_131153248	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131196045 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13839	CpG island 13839	within coordinates
Gm36753	predicted gene, 36753	32 bp upstream
Rr585350	regulatory region 585350	1393 bp distal
Rr585351	regulatory region 585351	within coordinates
Rr585352	regulatory region 585352	121 bp proximal
Rr585353	regulatory region 585353	381 bp proximal
Sgms2	sphingomyelin synthase 2	within coordinates
Tssr1055	transcription start site region 1055	555 bp downstream
Tssr1056	transcription start site region 1056	253 bp downstream
Tssr31735	transcription start site region 31735	531 bp downstream
Tssr31736	transcription start site region 31736	67 bp upstream
Tssr31737	transcription start site region 31737	1275 bp upstream
Tssr35707	transcription start site region 35707	1263 bp upstream
Tssr35708	transcription start site region 35708	1234 bp upstream
Tssr35709	transcription start site region 35709	527 bp upstream
Tssr35710	transcription start site region 35710	510 bp upstream
Tssr35711	transcription start site region 35711	348 bp upstream
Tssr35712	transcription start site region 35712	318 bp upstream
Tssr35713	transcription start site region 35713	49 bp upstream
Tssr35714	transcription start site region 35714	168 bp downstream
Tssr35715	transcription start site region 35715	226 bp downstream
Tssr35716	transcription start site region 35716	369 bp downstream
Tssr35717	transcription start site region 35717	445 bp downstream
Tssr35718	transcription start site region 35718	463 bp downstream
Tssr35719	transcription start site region 35719	706 bp downstream
Tssr35720	transcription start site region 35720	769 bp downstream
Tssr35721	transcription start site region 35721	991 bp downstream
Tssr35722	transcription start site region 35722	1043 bp downstream
Tssr35723	transcription start site region 35723	1102 bp downstream
Tssr35724	transcription start site region 35724	1115 bp downstream
Tssr35725	transcription start site region 35725	1153 bp downstream