rs221370343 SNP Detail

Summary

• ID
  rs221370343
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170785416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCAAGAA GCTATACCTT
  GGGAGGTCTC AGTATAACAC AGACATAAAA CCTTATGCAA GTAATCTACA CAGACAATTA
  TCCCAGGGCC CTATGGTTTG TGAAATTCTG AAGTTTATCT AGAAGAGAAC AGCAGCCAAG
  AAAATCTTGA AACAAACGAA TGAGAGAAAA CAGGGCTTTA TACACATCAA AATATAATAA
  A
  GATAATGATA ATAATAATGA TGATGATGTG ATGATGATGA TGATGATGAT GTGTATGCTA
  CTGAGGTGGG AAGAAAGAAA TGAAATAAGG CAACGGAAGA GGACTGGACA TGGGTGTAGA
  CCTGTGTGTG GGAGTTGATA ATGATATTTG AACCATTTCC AATCATTTGC TCAAGGAATA
  ACCTTGGAAT ACCTAGCCTC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	MA/MyJ	MOLF/EiJ
ss352376575	MGP_WTSI_1_172887978	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	MA/MyJ	MOLF/EiJ
rs221370343					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352376575	MGP_WTSI_1_172887978	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170785416 () rs orientation: forward

Symbol	Name	Function Class
Fcgr2b	Fc receptor, IgG, low affinity IIb	770 bp downstream
Gm70986	predicted gene, 70986	within coordinates
Rr20517	regulatory region 20517	985 bp proximal
Rr20518	regulatory region 20518	1585 bp proximal
Rr20519	regulatory region 20519	1984 bp proximal
Tssr14949	transcription start site region 14949	1048 bp downstream
Tssr14950	transcription start site region 14950	1892 bp downstream
Tssr14951	transcription start site region 14951	1970 bp downstream