rs221380170 SNP Detail

Summary

• ID
  rs221380170
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92131095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACT CTTACTTAGA CAGAACGCCC
  Y
  AATGTTTCAC TTCTACAAGG TTTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323071633	CHEV_9_92143880	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221380170					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92131095 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22145	CpG island 22145	1169 bp proximal
Gm67683	predicted gene, 67683	within coordinates
Plscr1	phospholipid scramblase 1	1170 bp upstream
Rr206878	regulatory region 206878	505 bp proximal
Rr383753	regulatory region 383753	383 bp upstream
Tssr86494	transcription start site region 86494	614 bp upstream
Tssr86495	transcription start site region 86495	636 bp upstream
Tssr86496	transcription start site region 86496	673 bp upstream
Tssr86497	transcription start site region 86497	707 bp upstream
Tssr86498	transcription start site region 86498	984 bp upstream
Tssr86499	transcription start site region 86499	997 bp upstream
Tssr86500	transcription start site region 86500	1019 bp upstream
Tssr86501	transcription start site region 86501	1041 bp upstream
Tssr86502	transcription start site region 86502	1082 bp upstream
Tssr86503	transcription start site region 86503	1123 bp upstream
Tssr86504	transcription start site region 86504	1153 bp upstream
Tssr86505	transcription start site region 86505	1254 bp upstream
Tssr90887	transcription start site region 90887	1430 bp downstream
Tssr90888	transcription start site region 90888	1468 bp downstream