rs221382435 SNP Detail

Summary

• ID
  rs221382435
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128049183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACTTGCAAA TGCCGAAGGG AAGGAACTGT
  ATAGCACGGT GGGAAGGCTC TGGCGCATAG GCGAAGACCA AGAGGGTTGG TCACGAAGCC
  GTTCTCGTTT GCCTTTTTCT GTTTCTGCTG CACGACCTCC GAGTCTCTCC GCCTGCGGGC
  S
  GCAGAGGAAA CCAATCGTTA TCCCGGCGCT TCCCCTTAAC CGAGTCGCTC TCCTTGCTCT
  GGGAGAGCTC GCACTCAGGT ACCGCGGTCC TGAAGCAGCT CCCACCTGCC TCGTTTGCAT
  CCCATCTTCC TCTTCTATTG ACTTTTAAAC                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323532333	CHEV_10_127650370	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221382435					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128049183 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2387	CpG island 2387	1260 bp distal
Cpgi2388	CpG island 2388	within coordinates
Rr213664	regulatory region 213664	1618 bp proximal
Rr224447	regulatory region 224447	982 bp distal
Rr224448	regulatory region 224448	within coordinates
Rr402345	regulatory region 402345	1303 bp downstream
Rr402346	regulatory region 402346	210 bp downstream
Spryd4	SPRY domain containing 4	1520 bp upstream
Tssr99849	transcription start site region 99849	1539 bp upstream
Tssr99850	transcription start site region 99850	1491 bp upstream