rs221384038 SNP Detail

Summary

• ID
  rs221384038
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84926107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTGAGCC TGAGTAAACG
  CCTGAGTGTA CACAGGTCTT GGACTTGTGT GCTCTGTCTG TCTCTCTCCC TTTTTCCCTC
  CCTCTCTCTA ATTCTCTGCC TTTATATATC TTTTTCTTTC AAATTTTGAG GCATGGTCTC
  ATAGAGTCCA AGCTGGCCTC AAACTCACCA AATAGCCCAA GGATGGCTTT GAACTCCTGA
  Y
  CCTGCTGCTT CTACCTTCTA GACAGGATCA CGCTCTGCAG CACGGGTTGA CATTTAACCT
  GTGATTTTCC TGCCTCAGCT TCTGAAGTGC TGGGCTAATA AGCTCAGAAC CTAACTTTTT
  TGTCCTCATT TAAAGTGCTC AGGGGGCCAT GAGGCCGTCT CTCCCATCTT CCAGGGCTTG
  CCCAGAGTTG GAGAATTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375393379	MGP_WTSI_8_86723377	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221384038					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375393379	MGP_WTSI_8_86723377	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84926107 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20681	CpG island 20681	1405 bp distal
Cpgi20682	CpG island 20682	666 bp distal
Cpgi20683	CpG island 20683	664 bp proximal
Gm26887	predicted gene, 26887	754 bp upstream
Gm37352	predicted gene, 37352	1391 bp upstream
Gm56830	predicted gene, 56830	893 bp upstream
Gm56836	predicted gene, 56836	280 bp downstream
Gm64014	predicted gene, 64014	499 bp downstream
Gm64130	predicted gene, 64130	1659 bp downstream
Gm65345	predicted gene, 65345	1466 bp upstream
Rr186982	regulatory region 186982	306 bp distal
Rr186983	regulatory region 186983	293 bp proximal
Rr368563	regulatory region 368563	1919 bp downstream
Tssr2623	transcription start site region 2623	2000 bp upstream
Tssr2624	transcription start site region 2624	692 bp downstream
Tssr78372	transcription start site region 78372	1357 bp upstream
Tssr78373	transcription start site region 78373	1382 bp upstream
Tssr78374	transcription start site region 78374	1453 bp upstream
Tssr82076	transcription start site region 82076	1885 bp upstream
Tssr82077	transcription start site region 82077	1798 bp upstream
Tssr82078	transcription start site region 82078	1519 bp upstream
Tssr82079	transcription start site region 82079	1114 bp upstream
Tssr82080	transcription start site region 82080	1084 bp upstream
Tssr82081	transcription start site region 82081	1055 bp upstream
Tssr82082	transcription start site region 82082	1139 bp downstream
Tssr82083	transcription start site region 82083	1252 bp downstream