rs221396620 SNP Detail

Summary

• ID
  rs221396620
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:41383392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGGAGA AAGATGCCAT
  GTGTTAGCAG TCAAGAAAGC ATAGGCATGA AGGGTGAGCA ATCAGAGTAA AGAACAGACC
  AGATGAAACA CAGTAAGCAA TTACTCAGAG TTATTGATAG GCAAGTAGGT TCTAATAGCA
  TATATCTAAT ATCTTCTCAA CTCTGGTGCT GATTAAGGCT TATTGTAAAT AATAAAAGCT
  R
  TAAGTCTTTT ATCCAGGAAC TGAACTATAA AAGGTAGGGT AGAAGCACCA GATTGAGATT
  AAATATTCAC TACAAAAACC GAAAGGAATT AAATCTGTCA GCAATACCAT CTCCTCAGAA
  AGTCACACAG ATGGAGCACA GAGCAACCTT GTTAATGCAT TAGACTTGGA TTTTCATACT
  TGTATATATC ATGTATTCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320246487	CHEV_2_41348900	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221396620					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:41383392 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D2Mit371	DNA segment, Chr 2, Massachusetts Institute of Technology 371			1808 bp proximal
Gm74545	predicted gene, 74545			1543 bp upstream
Lrp1b	low density lipoprotein-related protein 1B			Intron
				Noncoding-Transcript-Variant
Rr373095	regulatory region 373095			1048 bp downstream