rs221397249 SNP Detail

Summary

• ID
  rs221397249
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40583863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCAACAC TGTCCCCTCT
  CTATTTACTG ACATGCCCTT CCATGTCCTT CTTTTTCCTG TGTCCTTTAT ATTTATTTAT
  ATTTTATGTG TATATGTGGT TTTGTTTGCA TGTGTATCTA TGCACAAGTG TTTTGCCTGA
  ATGCATGTCT GTGCACCACG TGTGTGCCTG GTGCCAGCAG AGGGCAGAGG AGGGCATCAG
  R
  TCGCCTACAA CTGGAGTTAC CGGTGGCTGT TACTGGGTGC TGGGAGCCAT ACCCAGTCCC
  TCTACAAGAA CAGCGAGAAC CCTAACTAAT GAACCATCTC CCCAGCCCCT TTTCTCTCTT
  CTTGTAAAGG CTCCCCCAAC AAATTAAGGA ACAACCCCAA TTCAATATAA TCTCATCTTT
  GTTACAAGTC AAAGACTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357665442	MGP_WTSI_3_40428636	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221397249					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357665442	MGP_WTSI_3_40428636	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40583863 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13107	CpG island 13107	1537 bp proximal
Intu	inturned planar cell polarity protein	1696 bp upstream
Rr67318	regulatory region 67318	within coordinates
Rr77556	regulatory region 77556	1337 bp proximal
Tssr28946	transcription start site region 28946	1293 bp upstream
Tssr28947	transcription start site region 28947	1429 bp upstream
Tssr28948	transcription start site region 28948	1677 bp upstream
Tssr28949	transcription start site region 28949	1751 bp upstream
Tssr28950	transcription start site region 28950	1834 bp upstream
Tssr28951	transcription start site region 28951	1864 bp upstream
Tssr28952	transcription start site region 28952	1894 bp upstream
Tssr28953	transcription start site region 28953	1926 bp upstream
Tssr28954	transcription start site region 28954	1968 bp upstream