rs221405739 SNP Detail

Summary

• ID
  rs221405739
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:97878265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGAGAGT GCGGAAAGAA
  AGGGTGCAGA GACTGCTTCC TGGGACTTAT CCCCAGAAGA AGGCTGCAGC TGGGGACAGA
  AGTAGAGTGT GGGCTTAAGT AGGTGAGTGG CCTGGCACTG AGGTCAAAAG AAGGACCAAG
  AAAGGAAATG AATCCCAGTG TCACTCTCCT CTGGGTCCAA AAACCTAGAG GTGGTCTCCC
  M
  AAGACCTCAA TATAATATTA TGTAATACTA TGAGCCAAGG CAAGCCCCGC AACCAAAGGG
  ACTTTTGTTA GTTTTCCAGG TAAGGACTAA CGCCGTCGAC CAGGTTGGTT TCGAACTCAC
  GATCACTCTT CAGTTTATTG AAGGGATTAC AGAGGTGAGC CCACCAAACC TAGCCAGCCA
  TTGACTTTCT AATTCCTTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384402899	MGP_WTSI_11_97848753	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221405739					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384402899	MGP_WTSI_11_97848753	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:97878265 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3730	CpG island 3730	392 bp distal
Cpgi3731	CpG island 3731	241 bp proximal
Cpgi3732	CpG island 3732	981 bp proximal
Gm71812	predicted gene, 71812	1368 bp upstream
Gm74242	predicted gene, 74242	within coordinates
n-TCgca54	nuclear encoded tRNA cysteine 54 (anticodon GCA)	1484 bp downstream
n-TCgca55	nuclear encoded tRNA cysteine 55 (anticodon GCA)	807 bp downstream
Plxdc1	plexin domain containing 1	995 bp upstream
Rr247674	regulatory region 247674	within coordinates
Rr402924	regulatory region 402924	119 bp upstream
Rr402925	regulatory region 402925	645 bp upstream
Rr402926	regulatory region 402926	1393 bp upstream
Tssr110492	transcription start site region 110492	967 bp upstream
Tssr110493	transcription start site region 110493	1251 bp downstream
Tssr110494	transcription start site region 110494	1269 bp downstream