rs221407683 SNP Detail

Summary

• ID
  rs221407683
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69690238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTAAA ACATATATTT
  TGAAGGTGAT AATTCATTTC CTTGAGTTTT GCTAATGGTA CCTTTTATTA TATTCTCATG
  AGAATGGTAG AAGGAAATAA GATTTTTTAT ATTATTTAAT ATAATTTATA CAACATTACA
  TTAATATTTG CAGTATTTGG AGAAAATGGT TATGTGAAAC ACCTTTTGCT TCTGAGCACC
  R
  TGCTTGTGAA TTTCACAAAC ACCAGTAAAT GAAAATCAGT TTGTTTTTAT CACTATATAT
  TATTTAACTT TTTAATTATT TGGTGGTACA CATATAGTCG ATTCTAATTT TTCTTTTAAT
  CACATAACTT ACTATTATGA ACATTTAAGT TATCTAAGTG CTTATTTATT TATTTTATGT
  GTGTGTCCTG GGAGTATGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354379885	MGP_WTSI_2_69697951	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221407683					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354379885	MGP_WTSI_2_69697951	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69690238 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11719	CpG island 11719	1333 bp proximal
Rr397021	regulatory region 397021	463 bp upstream
Rr397022	regulatory region 397022	1468 bp upstream
Rr558481	regulatory region 558481	1825 bp distal
Rr558482	regulatory region 558482	1554 bp distal
Rr558483	regulatory region 558483	1178 bp proximal
Rr558484	regulatory region 558484	1679 bp proximal
Ssb	small RNA binding exonuclease protection factor La	1725 bp upstream
Tssr18173	transcription start site region 18173	1683 bp upstream
Tssr18174	transcription start site region 18174	1691 bp upstream
Tssr18175	transcription start site region 18175	1744 bp upstream