rs221410078 SNP Detail

Summary

• ID
  rs221410078
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72537708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCAATGC TATCCCAAAA
  GTCCCCCATA CCCTCCCCCC CCCCACTTCC CTACCCACCC ATTCTCATTT TTTTGACCCT
  GGCGTTCCCC TGTACTGGGG CATATAAAGT TTGTGTGTGT GTGATGGGCC TCTCTTTCCA
  GTGATGGCCG ACTAGGGCAT CTTTTGATAC ATATGCAGCT AAAGTCAAGA GCTCCGGGGT
  R
  CTGGTTAGTT CATAATGTTG TTGCACCTAC AGGGTTGCAG ATCTCTTTAG CTCCTTAGAT
  ACTTTCTCTA GCTCGGCACT GTCTTTCCTA CACAGATATC ATGTCAGAAT CAAAGTTTGC
  TTTGTTTTAC AGCATCATTC TACCAAACAC AGCCTCCACC CCACCCATCC CAACTCACCA
  CTCGTTTATA CACTGCACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403771582	MGP_WTSI_X_70739441	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221410078					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403771582	MGP_WTSI_X_70739441	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72537708 () rs orientation: forward

Symbol	Name	Function Class
Bgn	biglycan	within coordinates
Rr4565	regulatory region 4565	108 bp distal
Rr6090	regulatory region 6090	708 bp distal
Rr7747	regulatory region 7747	865 bp proximal
Rr10758	regulatory region 10758	181 bp distal
Tssr5633	transcription start site region 5633	825 bp downstream
Tssr5634	transcription start site region 5634	595 bp downstream
Tssr5635	transcription start site region 5635	950 bp downstream
Tssr161219	transcription start site region 161219	1967 bp downstream
Tssr161220	transcription start site region 161220	1364 bp downstream
Tssr161221	transcription start site region 161221	1305 bp downstream
Tssr161222	transcription start site region 161222	1290 bp downstream
Tssr161223	transcription start site region 161223	1120 bp downstream
Tssr161224	transcription start site region 161224	1066 bp downstream
Tssr161225	transcription start site region 161225	888 bp downstream
Tssr161226	transcription start site region 161226	837 bp downstream
Tssr161227	transcription start site region 161227	787 bp downstream
Tssr161228	transcription start site region 161228	496 bp upstream
Tssr161229	transcription start site region 161229	529 bp upstream
Tssr161230	transcription start site region 161230	553 bp upstream
Tssr161231	transcription start site region 161231	570 bp upstream
Tssr161232	transcription start site region 161232	621 bp upstream
Tssr161233	transcription start site region 161233	693 bp upstream
Tssr161234	transcription start site region 161234	713 bp upstream
Tssr161235	transcription start site region 161235	778 bp upstream
Tssr161236	transcription start site region 161236	821 bp upstream
Tssr161237	transcription start site region 161237	875 bp upstream
Tssr161238	transcription start site region 161238	911 bp upstream
Tssr161239	transcription start site region 161239	960 bp upstream
Tssr161240	transcription start site region 161240	974 bp upstream
Tssr161241	transcription start site region 161241	1010 bp upstream
Tssr161242	transcription start site region 161242	1043 bp upstream
Tssr161243	transcription start site region 161243	1207 bp upstream
Tssr161244	transcription start site region 161244	1231 bp upstream
Tssr161245	transcription start site region 161245	1326 bp upstream
Tssr161246	transcription start site region 161246	1482 bp upstream
Tssr161247	transcription start site region 161247	1505 bp upstream
Tssr161248	transcription start site region 161248	1774 bp upstream
Tssr163546	transcription start site region 163546	1975 bp upstream
Tssr163547	transcription start site region 163547	516 bp downstream
Tssr163548	transcription start site region 163548	622 bp downstream
Tssr163549	transcription start site region 163549	699 bp downstream
Tssr163550	transcription start site region 163550	754 bp downstream
Tssr163551	transcription start site region 163551	839 bp downstream
Tssr163552	transcription start site region 163552	965 bp downstream
Tssr163553	transcription start site region 163553	1051 bp downstream
Tssr163554	transcription start site region 163554	1070 bp downstream
Tssr163555	transcription start site region 163555	1097 bp downstream