GCATTTAAAC TCAACATGCA
TATTTGGAAA TGTGGGGGAA AAGTGTCTTA CCCTAGATGT TTAGCCATGG TCAAATTAGA
CCCCTGACTT TCTGGAAACA AAATATGTAG TTACCTTTTA CTCTGACCAT CATCTCCCAC
CTGCCTAAGG TACTTAGTCC TTAGTTAGAC GGCCTCTATG CCAGGCCTGC AATTATTAAA
Y
GCTCATCACT GCATGGAGAA TAAAATTTGT CTTTCCTGCC TTAAAGTTAA TTTCGGTCTT
CTGGCTCAAA TCCTGATCTG GTCCACTTAA GTGTTCGAAG TCAAGTTTCT GAAAAGATTA
GAGAAGAACA TCCCCCCAAA ATTGCCCACA CTAACTACAG ACAACAAACA AGACTTTATT
TAAATAAGGA GACAGCCTTC
Y = C/T
Note: Sequence in lower case indicates low-complexity or repetitive sequence |
| Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ss401662576 | MGP_WTSI_19_5798185 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | T | T |
| SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
| rs221416195 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | T | T | ||||
| Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
|---|---|---|---|---|---|---|
| ss401662576 | MGP_WTSI_19_5798185 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/T |
| Location: Chr19:5848213 () rs orientation: forward | ||||||||
| Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
|---|---|---|---|---|---|---|---|---|
| Gm55521 | predicted gene, 55521 | 815 bp downstream | ||||||
| Malat1 | metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) | within coordinates | ||||||
| Tssr5415 | transcription start site region 5415 | 1319 bp upstream | ||||||
| Tssr5416 | transcription start site region 5416 | 870 bp upstream | ||||||
| Tssr5417 | transcription start site region 5417 | 841 bp downstream | ||||||
| Tssr5418 | transcription start site region 5418 | 1324 bp downstream | ||||||
| Tssr5419 | transcription start site region 5419 | 1978 bp downstream | ||||||
| Tssr5420 | transcription start site region 5420 | 1995 bp downstream | ||||||
| Tssr157645 | transcription start site region 157645 | 1804 bp upstream | ||||||
| Tssr157646 | transcription start site region 157646 | 1702 bp upstream | ||||||
| Tssr157647 | transcription start site region 157647 | 1615 bp upstream | ||||||
| Tssr157648 | transcription start site region 157648 | 1448 bp upstream | ||||||
| Tssr157649 | transcription start site region 157649 | 1356 bp upstream | ||||||
| Tssr157650 | transcription start site region 157650 | 1291 bp upstream | ||||||
| Tssr157651 | transcription start site region 157651 | 1221 bp upstream | ||||||
| Tssr157652 | transcription start site region 157652 | 1081 bp upstream | ||||||
| Tssr157653 | transcription start site region 157653 | 997 bp upstream | ||||||
| Tssr157654 | transcription start site region 157654 | 943 bp upstream | ||||||
| Tssr157655 | transcription start site region 157655 | 917 bp upstream | ||||||
| Tssr157656 | transcription start site region 157656 | 884 bp upstream | ||||||
| Tssr157657 | transcription start site region 157657 | 764 bp upstream | ||||||
| Tssr157658 | transcription start site region 157658 | 658 bp upstream | ||||||
| Tssr157659 | transcription start site region 157659 | 554 bp upstream | ||||||
| Tssr157660 | transcription start site region 157660 | 458 bp upstream | ||||||
| Tssr157661 | transcription start site region 157661 | 425 bp upstream | ||||||
| Tssr157662 | transcription start site region 157662 | 332 bp upstream | ||||||
| Tssr157663 | transcription start site region 157663 | 271 bp upstream | ||||||
| Tssr157664 | transcription start site region 157664 | 157 bp upstream | ||||||
| Tssr157665 | transcription start site region 157665 | 148 bp upstream | ||||||
| Tssr157666 | transcription start site region 157666 | 116 bp upstream | ||||||
| Tssr157667 | transcription start site region 157667 | 125 bp downstream | ||||||
| Tssr157668 | transcription start site region 157668 | 172 bp downstream | ||||||
| Tssr157669 | transcription start site region 157669 | 187 bp downstream | ||||||
| Tssr157670 | transcription start site region 157670 | 207 bp downstream | ||||||
| Tssr157671 | transcription start site region 157671 | 224 bp downstream | ||||||
| Tssr157672 | transcription start site region 157672 | 273 bp downstream | ||||||
| Tssr157673 | transcription start site region 157673 | 290 bp downstream | ||||||
| Tssr157674 | transcription start site region 157674 | 320 bp downstream | ||||||
| Tssr157675 | transcription start site region 157675 | 339 bp downstream | ||||||
| Tssr157676 | transcription start site region 157676 | 350 bp downstream | ||||||
| Tssr157677 | transcription start site region 157677 | 372 bp downstream | ||||||
| Tssr157678 | transcription start site region 157678 | 384 bp downstream | ||||||
| Tssr157679 | transcription start site region 157679 | 421 bp downstream | ||||||
| Tssr157680 | transcription start site region 157680 | 476 bp downstream | ||||||
| Tssr157681 | transcription start site region 157681 | 505 bp downstream | ||||||
| Tssr157682 | transcription start site region 157682 | 523 bp downstream | ||||||
| Tssr157683 | transcription start site region 157683 | 549 bp downstream | ||||||
| Tssr157684 | transcription start site region 157684 | 565 bp downstream | ||||||
| Tssr157685 | transcription start site region 157685 | 575 bp downstream | ||||||
| Tssr157686 | transcription start site region 157686 | 590 bp downstream | ||||||
| Tssr157687 | transcription start site region 157687 | 659 bp downstream | ||||||
| Tssr157688 | transcription start site region 157688 | 709 bp downstream | ||||||
| Tssr157689 | transcription start site region 157689 | 740 bp downstream | ||||||
| Tssr157690 | transcription start site region 157690 | 818 bp downstream | ||||||
| Tssr157691 | transcription start site region 157691 | 864 bp downstream | ||||||
| Tssr157692 | transcription start site region 157692 | 918 bp downstream | ||||||
| Tssr157693 | transcription start site region 157693 | 975 bp downstream | ||||||
| Tssr157694 | transcription start site region 157694 | 1033 bp downstream | ||||||
| Tssr157695 | transcription start site region 157695 | 1097 bp downstream | ||||||
| Tssr157696 | transcription start site region 157696 | 1118 bp downstream | ||||||
| Tssr157697 | transcription start site region 157697 | 1167 bp downstream | ||||||
| Tssr157698 | transcription start site region 157698 | 1183 bp downstream | ||||||
| Tssr157699 | transcription start site region 157699 | 1241 bp downstream | ||||||
| Tssr157700 | transcription start site region 157700 | 1290 bp downstream | ||||||
| Tssr157701 | transcription start site region 157701 | 1308 bp downstream | ||||||
| Tssr157702 | transcription start site region 157702 | 1344 bp downstream | ||||||
| Tssr157703 | transcription start site region 157703 | 1395 bp downstream | ||||||
| Tssr157704 | transcription start site region 157704 | 1421 bp downstream | ||||||
| Tssr157705 | transcription start site region 157705 | 1442 bp downstream | ||||||
| Tssr157706 | transcription start site region 157706 | 1490 bp downstream | ||||||
| Tssr157707 | transcription start site region 157707 | 1536 bp downstream | ||||||
| Tssr157708 | transcription start site region 157708 | 1546 bp downstream | ||||||
| Tssr157709 | transcription start site region 157709 | 1558 bp downstream | ||||||
| Tssr157710 | transcription start site region 157710 | 1577 bp downstream | ||||||
| Tssr157711 | transcription start site region 157711 | 1596 bp downstream | ||||||
| Tssr157712 | transcription start site region 157712 | 1633 bp downstream | ||||||
| Tssr157713 | transcription start site region 157713 | 1660 bp downstream | ||||||
| Tssr157714 | transcription start site region 157714 | 1711 bp downstream | ||||||
| Tssr157715 | transcription start site region 157715 | 1728 bp downstream | ||||||
| Tssr157716 | transcription start site region 157716 | 1772 bp downstream | ||||||
| Tssr157717 | transcription start site region 157717 | 1799 bp downstream | ||||||
| Tssr157718 | transcription start site region 157718 | 1844 bp downstream | ||||||
| Tssr157719 | transcription start site region 157719 | 1898 bp downstream | ||||||
| Tssr157720 | transcription start site region 157720 | 1917 bp downstream | ||||||
| Tssr157721 | transcription start site region 157721 | 1953 bp downstream | ||||||
| Tssr157722 | transcription start site region 157722 | 1970 bp downstream | ||||||
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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