rs221416964 SNP Detail

Summary

• ID
  rs221416964
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52137060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCATGAAA TTAACAGTGT
  AATTTACGTG TGAGTTTGGG GGGATCCCTT CTCTATAGGA AGGGAAGAAG AATGCAAAGT
  CACTCTTCGG GCTTCTGGGT TGTGTTTTTT CTCCACACGT AGAAGTTGTC CCCTCCCCCA
  CACCTCTCAA CCCCGCCCCC AGCAAACCTG GCCATCCTCC TGGAAACCTA AGCAGACCTA
  Y
  GTCCCTGGTC CCCCTTAGTG ACAACTGAAC ACTTACCCCA ACCCACTTTC GGGGAGTAGT
  ATTTCTCTGT GACCCATGAC TCGCCCCAAA GCATGGTAAA GGGAGGAGCA CCCGGGAAGT
  GTCCTGCCTT AGCCTCTTCT TCTGGGAAAC CATCCAAGTA GAGTCTTTTG GGAGGACAGT
  CCTCCCGCTA AGAGGAAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368308180	MGP_WTSI_6_52110079	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221416964					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368308180	MGP_WTSI_6_52110079	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52137060 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17410	CpG island 17410	892 bp distal
Cpgi17411	CpG island 17411	508 bp proximal
D6Mit93	DNA segment, Chr 6, Massachusetts Institute of Technology 93	1633 bp proximal
Gm56050	predicted gene, 56050	1524 bp downstream
Gm56051	predicted gene, 56051	962 bp upstream
Gm56052	predicted gene, 56052	1930 bp upstream
Hotairm1	Hoxa transcript antisense RNA, myeloid-specific 1	within coordinates
Hotairm2	Hoxa transcript antisense RNA, myeloid-specific 2	1551 bp downstream
Hoxa1	homeobox A1	1761 bp upstream
Rr448	regulatory region 448	1052 bp proximal
Rr630346	regulatory region 630346	1273 bp distal
Tssr56499	transcription start site region 56499	1657 bp downstream
Tssr56500	transcription start site region 56500	1624 bp downstream
Tssr56501	transcription start site region 56501	1596 bp downstream
Tssr60974	transcription start site region 60974	1756 bp upstream