rs221417200 SNP Detail

Summary

• ID
  rs221417200
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122825677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACCCTTT TTTATTTCAT
  TTTTAATTAG TTCCTTTAAA ATTGGCTGCA TACAGTACTT TATATTAGCA TGGTCCAGGC
  AAACATTAAT TTGAAAAAAA AAAAAAGAAA AGAAAAGAAA AGAAAAAAAA GAGAGTGTGC
  CTGACACTTT TGTCATGTAA GATACCTAGA CTCATGTTTA AAATCTTTTG ATATTGCTGT
  Y
  GAAGCATGCA TTGATCCTGA AGTTCCACCC ATCATCCCAT TAGGATATTG TTTTATTCTA
  TGTGAGATAC AAAGTCTAAT GTAAAAAGCC GAAGACGATG GGGCCAGGTA CGTACTGCAC
  ACCTGCACAC GCCTAATCCC AGCAGGAGAT GGCAAGGCCC TGTGTGGAAA ACAGAAAGGA
  ATTCAAGACC TTAAGAAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369914760	MGP_WTSI_6_122798736	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221417200					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369914760	MGP_WTSI_6_122798736	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122825677 () rs orientation: forward

Symbol	Name	Function Class
C3ar1	complement component 3a receptor 1	within coordinates
Tssr58709	transcription start site region 58709	742 bp downstream
Tssr58710	transcription start site region 58710	522 bp downstream
Tssr58711	transcription start site region 58711	1739 bp upstream
Tssr58712	transcription start site region 58712	1857 bp upstream
Tssr58713	transcription start site region 58713	1913 bp upstream
Tssr62966	transcription start site region 62966	932 bp upstream
Tssr62967	transcription start site region 62967	887 bp upstream
Tssr62968	transcription start site region 62968	839 bp upstream
Tssr62969	transcription start site region 62969	519 bp upstream
Tssr62970	transcription start site region 62970	499 bp upstream
Tssr62971	transcription start site region 62971	439 bp upstream
Tssr62972	transcription start site region 62972	339 bp upstream
Tssr62973	transcription start site region 62973	278 bp upstream
Tssr62974	transcription start site region 62974	192 bp upstream
Tssr62975	transcription start site region 62975	107 bp upstream
Tssr62976	transcription start site region 62976	18 bp upstream
Tssr62977	transcription start site region 62977	within coordinates
Tssr62978	transcription start site region 62978	75 bp downstream
Tssr62979	transcription start site region 62979	106 bp downstream
Tssr62980	transcription start site region 62980	131 bp downstream
Tssr62981	transcription start site region 62981	150 bp downstream
Tssr62982	transcription start site region 62982	311 bp downstream
Tssr62983	transcription start site region 62983	768 bp downstream
Tssr62984	transcription start site region 62984	838 bp downstream
Tssr62985	transcription start site region 62985	881 bp downstream
Tssr62986	transcription start site region 62986	1192 bp downstream
Tssr62987	transcription start site region 62987	1322 bp downstream
Tssr62988	transcription start site region 62988	1390 bp downstream
Tssr62989	transcription start site region 62989	1549 bp downstream
Tssr62990	transcription start site region 62990	1595 bp downstream
Tssr62991	transcription start site region 62991	1622 bp downstream
Tssr62992	transcription start site region 62992	1647 bp downstream
Tssr62993	transcription start site region 62993	1741 bp downstream
Tssr62994	transcription start site region 62994	1847 bp downstream
Tssr62995	transcription start site region 62995	1964 bp downstream