rs221419449 SNP Detail

Summary

• ID
  rs221419449
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52136967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTTAAGG AGGAGAAATT
  CAGCGGTCAC TTAAAAAACA CCGTGCAGAC AGTTCTGCAC AAGTTTTCTT CTCGATGTTT
  CTAGCTTTAT ATCAGGCATG AAATTAACAG TGTAATTTAC GTGTGAGTTT GGGGGGATCC
  CTTCTCTATA GGAAGGGAAG AAGAATGCAA AGTCACTCTT CGGGCTTCTG GGTTGTGTTT
  K
  TTCTCCACAC GTAGAAGTTG TCCCCTCCCC CACACCTCTC AACCCCGCCC CCAGCAAACC
  TGGCCATCCT CCTGGAAACC TAAGCAGACC TACGTCCCTG GTCCCCCTTA GTGACAACTG
  AACACTTACC CCAACCCACT TTCGGGGAGT AGTATTTCTC TGTGACCCAT GACTCGCCCC
  AAAGCATGGT AAAGGGAGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368308177	MGP_WTSI_6_52109986	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221419449					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368308177	MGP_WTSI_6_52109986	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52136967 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17410	CpG island 17410	799 bp distal
Cpgi17411	CpG island 17411	601 bp proximal
D6Mit93	DNA segment, Chr 6, Massachusetts Institute of Technology 93	1726 bp proximal
Gm56050	predicted gene, 56050	1431 bp downstream
Gm56051	predicted gene, 56051	1055 bp upstream
Hotairm1	Hoxa transcript antisense RNA, myeloid-specific 1	within coordinates
Hotairm2	Hoxa transcript antisense RNA, myeloid-specific 2	1458 bp downstream
Hoxa1	homeobox A1	1668 bp upstream
Rr448	regulatory region 448	1145 bp proximal
Rr630346	regulatory region 630346	1180 bp distal
Tssr56499	transcription start site region 56499	1564 bp downstream
Tssr56500	transcription start site region 56500	1531 bp downstream
Tssr56501	transcription start site region 56501	1503 bp downstream
Tssr60974	transcription start site region 60974	1663 bp upstream