rs221421694 SNP Detail

Summary

• ID
  rs221421694
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130914552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCCAAGCA TGGATACAAA
  CCACATACAA CCAGCCAGTG AGGATGCTAG TGTCCTGAGA CCCTTACCTA TGAAGCCCTT
  GCTTTGTGCA GAGGAAAAGG CCTGATACGG ACCAGTGAGA TGCAGAGACA GACACAGGGC
  AGAGATGGGT TCATACTCAC AGAGGACACG GAGCATAACT GGAGCAGAGG TAGTGGCCCC
  R
  GTGGGGAGAT CAGCCCTGCA GTGGTACAGC CCAGCCTGAG CCCGGACCAC AGGGGTGAAG
  GAGAGTGTGG GCACAGGAGC TGAATGTAGT CGGTGGCGAT TCCAGAACCA CGTGAAGGAA
  GAGTTGCCCG TGGGCCCAGA GCCACCAGGG AGGAGGCAGC TTAAGTTCAG AGCTGTGCCC
  TCTGGCACAT CCAAGCCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355675454	MGP_WTSI_2_130898368	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221421694					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355675454	MGP_WTSI_2_130898368	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130914552 () rs orientation: forward

Symbol	Name	Function Class
Siglec1	sialic acid binding Ig-like lectin 1, sialoadhesin	within coordinates
Tssr26345	transcription start site region 26345	1473 bp upstream
Tssr26346	transcription start site region 26346	1383 bp upstream
Tssr26347	transcription start site region 26347	1352 bp upstream
Tssr26348	transcription start site region 26348	1235 bp upstream
Tssr26349	transcription start site region 26349	within coordinates
Tssr26350	transcription start site region 26350	4 bp downstream
Tssr26351	transcription start site region 26351	21 bp downstream
Tssr26352	transcription start site region 26352	1671 bp downstream
Tssr26353	transcription start site region 26353	1796 bp downstream
Tssr26354	transcription start site region 26354	1868 bp downstream