rs221423958 SNP Detail

Summary

• ID
  rs221423958
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:180681860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTTCTCG GTAAACTGTC
  AGCATGAAAG CAGTTCCCTA CCCCAGCTCT GTGGGCAGCG AGCTACTGGC CAGAGAGGAG
  AGGTGCTTGG AGACAAGCTG TAGGGTGCTA GGGATGGTCC TGAGGGATGC CACTAAGGAG
  AAGGTGCTCG AGTACTTTGG TTCCTAGAGT GCTTTGGTGG CACGCGGGGG GGCGGGGGGG
  A
  GGCTGGGGGG GAGGTGCGAG AGGGAGGGGG CATCTAAGCA GCAGGTGATG GAAGGAGAGA
  CAACGGGTTC CCAAGAAGAA AGAAACCCTG TCCAACACCA AAAGCCAGAT CCCAACCATG
  CCTTGTCCCA GAGACTCTGC CGTTGACTCC AAGCCCCAAG ATGGAGACAA TCCTGAAGTT
  GAAGGCAAGA AAGTGCTGTC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CE/J	CZECHII/EiJ	FVB/NJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J
ss356772257	MGP_WTSI_2_180774772	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CE/J	CZECHII/EiJ	FVB/NJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J
rs221423958					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356772257	MGP_WTSI_2_180774772	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180681860 () rs orientation: forward

Symbol	Name	Function Class
Chrna4	cholinergic receptor, nicotinic, alpha polypeptide 4	Intron
Cpgi12912	CpG island 12912	243 bp distal
Gm74971	predicted gene, 74971	1220 bp downstream
Rr572909	regulatory region 572909	1003 bp distal
Rr572910	regulatory region 572910	272 bp distal
Rr572911	regulatory region 572911	1910 bp proximal
Tssr28154	transcription start site region 28154	875 bp upstream
Tssr28155	transcription start site region 28155	839 bp upstream
Tssr28156	transcription start site region 28156	785 bp upstream
Tssr28157	transcription start site region 28157	747 bp upstream