rs221426079 SNP Detail

Summary

• ID
  rs221426079
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136805386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCACCGC GTTGCCAGGC
  ACTGGGCCCA TAGAGCGAAT ACAACAACTT CAGAGCCAGA GGTACTTCCG CTCTCATTCA
  CTATCCGATT GGATAACTAT AGGCCAAGAG ACCCGCCTCA TTCCAGAGTA TTGTAGATTG
  ACACTAATAT AACCCAATAG AAATAAAAAG TAAGGAAGCT GCTATTTGAT TGGCCAATTG
  Y
  TCTCAGAATT CTGACGCATT TCCGCAACTG CTTCTCTCTG GGGACACACT AGGTAGCGGT
  ATGCGTACGC TTCTGTGTCG GCCATTGGAT CTGTGTTAGT TGTCGTGTGT AAATGGATGC
  TGTTTTTCAG GAATGCTTCC ATAGAAAACA AGTTAGGTAA TAACACTGGG CACCGAGTCT
  AAGGTGCTCA GCAAACATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	MOLF/EiJ	NZB/BlNJ	SM/J	SPRET/EiJ
ss370220318	MGP_WTSI_6_136776909	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	MOLF/EiJ	NZB/BlNJ	SM/J	SPRET/EiJ
rs221426079					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370220318	MGP_WTSI_6_136776909	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136805386 () rs orientation: forward

Symbol	Name	Function Class
BC049715	cDNA sequence BC049715	within coordinates
Cpgi18110	CpG island 18110	within coordinates
Rr380176	regulatory region 380176	within coordinates
Rr640072	regulatory region 640072	166 bp distal
Rr640073	regulatory region 640073	within coordinates
Rr640074	regulatory region 640074	466 bp proximal
Smco3	single-pass membrane protein with coiled-coil domains 3	1543 bp downstream
Tssr2044	transcription start site region 2044	69 bp upstream
Tssr59337	transcription start site region 59337	628 bp downstream
Tssr59338	transcription start site region 59338	590 bp downstream
Tssr59339	transcription start site region 59339	577 bp downstream
Tssr59340	transcription start site region 59340	549 bp downstream
Tssr59341	transcription start site region 59341	26 bp upstream
Tssr59342	transcription start site region 59342	424 bp upstream
Tssr63836	transcription start site region 63836	644 bp upstream
Tssr63837	transcription start site region 63837	627 bp upstream
Tssr63838	transcription start site region 63838	619 bp upstream
Tssr63839	transcription start site region 63839	563 bp upstream
Tssr63840	transcription start site region 63840	326 bp upstream
Tssr63841	transcription start site region 63841	209 bp upstream
Tssr63842	transcription start site region 63842	191 bp upstream
Wbp11	WW domain binding protein 11	172 bp upstream