rs221436647 SNP Detail

Summary

• ID
  rs221436647
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:121264514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGGGATG GTGGCGGGGG
  TTCCCTCGTT CTTCCTCTCC CCAAGTTTGT GGGCTCGGGA GGGGCGCCAA CGGCCGGTGC
  CAGGTCCCGC GGGTGTGAGG GACGAGAAGC GCGGGGCGCG CGGCCGACCT GAAGCCACAC
  TCGCGGCTGC GCGCGCGCGC GCTGGGCTCA GCCGGCTCTG CTGCCGCGGA AGTGCGCGGG
  S
  AAGTGCGCGG GGGCGGCTCC GGGGCTCGGG GTTGTAGCAA AACTTTGGAT GGGGCGGGGG
  CGCCCAGGCA GGTGGTTGGA TGGGGGGGGG GGTGCTTTAC CTGGGGTGGC AGTCCAAGGG
  GCCTCCGAAC CCCCCGCCCA GCCCTTCCCG CTCCGCCTGG ATGCGCCTCC CCGCCCCCCG
  CGGCCGCGCT GACGGCGAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss376272899	MGP_WTSI_8_123061675	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs221436647					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376272899	MGP_WTSI_8_123061675	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:121264514 () rs orientation: forward

Symbol	Name	Function Class
1700016A09Rik	RIKEN cDNA 1700016A09 gene	49 bp upstream
Cpgi21150	CpG island 21150	within coordinates
Gse1	genetic suppressor element 1, coiled-coil protein	within coordinates
Mir7687	microRNA 7687	921 bp upstream
Rr186097	regulatory region 186097	within coordinates
Rr368650	regulatory region 368650	1714 bp upstream
Rr401179	regulatory region 401179	265 bp downstream
Rr401180	regulatory region 401180	1045 bp upstream
Tssr79770	transcription start site region 79770	1908 bp downstream
Tssr79771	transcription start site region 79771	1202 bp downstream
Tssr79772	transcription start site region 79772	382 bp downstream
Tssr79773	transcription start site region 79773	330 bp downstream
Tssr79774	transcription start site region 79774	304 bp downstream
Tssr79775	transcription start site region 79775	274 bp downstream
Tssr79776	transcription start site region 79776	263 bp downstream
Tssr83196	transcription start site region 83196	499 bp upstream
Tssr83197	transcription start site region 83197	196 bp upstream
Tssr83198	transcription start site region 83198	117 bp upstream
Tssr83199	transcription start site region 83199	83 bp upstream
Tssr83200	transcription start site region 83200	within coordinates
Tssr83201	transcription start site region 83201	872 bp downstream