rs221449420 SNP Detail

Summary

• ID
  rs221449420
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:14371283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCAGCGG CGGCGGCGGC
  CCGGGATGGC CTTCATGGAG AAGCCGCCGG CTGGCAAGGT GCTGCTGGAC GACACGGTGC
  CGCTGACAGC GGCCGTCGAG GCGAGCCAGA GTCTGCAGTC GCACACGGTG CGCGGCTGGG
  GCGGGAGGCC GGGGCCGAGG GCGGGGGCCG GGCGAAGGCC GGACGGCGGC GCGGCGCGGC
  Y
  GGGCGCGGGC ACCGGAGCCG GGCAGGTGTG TGAGCCCGCT GCCTCCCTCC TGCCGGGCCG
  CGGCCGGGGC GGCGTGCCCG CGCATCCCAG ACCCCCTGGA GTGGCTTAGG GGAGCCCTCG
  GTGCTCGTAG TACGCACAGG CGAGTTCATT TCTGCCACAT GCAGTCTTTT ATGGGGCTTT
  AAAGCCACGC TTGCTTTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390190225	MGP_WTSI_14_8931004	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	T	T	T	T	T	C	T	T	T	C	C	T	C	C	C	C	C	C	C	T	T	C	C	T	T	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221449420					SNP	C	T	T	T	T	T	T	C	T	T	T	C	C	T	C	C	C	C	C	C	C	T	T	C	C	T	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390190225	MGP_WTSI_14_8931004	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14371283 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi6156	CpG island 6156			within coordinates
Pxk	PX domain containing serine/threonine kinase			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr487874	regulatory region 487874			912 bp distal
Rr487875	regulatory region 487875			225 bp proximal
Tssr4245	transcription start site region 4245			1109 bp downstream
Tssr124235	transcription start site region 124235			194 bp downstream