rs221466003 SNP Detail

Summary

• ID
  rs221466003
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41116578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAG GAGTCTTGTA CTAGTTGCTC
  Y
  TTGTGTCTGA GGCCTAGTGG AACAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	PWK/PhJ	SPRET/EiJ
ss919795182	MGP_WTSI_9_41205282	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	PWK/PhJ	SPRET/EiJ
rs221466003					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919795182	MGP_WTSI_9_41205282	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41116578 () rs orientation: forward

Symbol	Name	Function Class
1700063D05Rik	RIKEN cDNA 1700063D05 gene	873 bp upstream
Gm68881	predicted gene, 68881	169 bp downstream
Rr194790	regulatory region 194790	378 bp distal
Rr194791	regulatory region 194791	23 bp proximal
Rr383259	regulatory region 383259	1235 bp upstream
Tssr2832	transcription start site region 2832	904 bp upstream
Tssr84492	transcription start site region 84492	870 bp upstream