rs221466569 SNP Detail

Summary

• ID
  rs221466569
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:82604553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACTGACT GACGGGAAAC
  CTTACCTCCA GGGCTCAGGG GCTCACGTCT ATAATTCTAG CACTCACAAG GTGGGGGCGG
  GAGATTGCAT GAATTTGAGG CCAGCCAAAG TTATGTAATG AGTTCTAAGC AAGAGACGCT
  GTCTCAAAAA TGCATGCCTT TAATCCTAGC GCTGGGGAAG CAGAGGTTGA GCTCTGTGAG
  Y
  TTGAAACCAG CCTGATCTAC AAAGTGAGTT CCAGTACAGC CAGGACACAG AAAAACCCTG
  TCTCCACACA CACACACACA CACACACACA CACACACATC CACTACCACC ACCACCACAA
  CAACAACAAA ACAGACAACA AAAACCCACC AGGGGCTAGA GAGTTGGTCA GCCATTAAGA
  GTATTGACTG CTCTTGCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401436780	MGP_WTSI_18_82755820	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	T	C	T	T	C	C	C	T	C	C	C	C	C	C	C	C	C	T	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221466569					SNP	T	T	T	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	T	C	T	T	C	C	C	T	C	C	C	C	C	C	C	C	C	T	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401436780	MGP_WTSI_18_82755820	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82604553 () rs orientation: forward

Symbol	Name	Function Class
D18Nds1	DNA segment, Chr 18, Nuffield Department of Surgery 1	32 bp proximal
Gm58829	predicted gene, 58829	790 bp upstream
Mbp	myelin basic protein	791 bp downstream
Tssr152157	transcription start site region 152157	1973 bp downstream
Tssr152158	transcription start site region 152158	1936 bp downstream
Tssr152159	transcription start site region 152159	1912 bp downstream
Tssr152160	transcription start site region 152160	1866 bp downstream
Tssr152161	transcription start site region 152161	1850 bp downstream
Tssr152162	transcription start site region 152162	1829 bp downstream
Tssr152163	transcription start site region 152163	1812 bp downstream
Tssr152164	transcription start site region 152164	1767 bp downstream
Tssr152165	transcription start site region 152165	1694 bp downstream
Tssr152166	transcription start site region 152166	1658 bp downstream
Tssr152167	transcription start site region 152167	1626 bp downstream
Tssr152168	transcription start site region 152168	1597 bp downstream
Tssr152169	transcription start site region 152169	1544 bp downstream
Tssr152170	transcription start site region 152170	1436 bp downstream
Tssr152171	transcription start site region 152171	1392 bp downstream
Tssr152172	transcription start site region 152172	1289 bp downstream
Tssr152173	transcription start site region 152173	1274 bp downstream
Tssr152174	transcription start site region 152174	1240 bp downstream
Tssr152175	transcription start site region 152175	1205 bp downstream
Tssr152176	transcription start site region 152176	1016 bp downstream
Tssr152177	transcription start site region 152177	836 bp downstream
Tssr154085	transcription start site region 154085	1887 bp upstream
Tssr154086	transcription start site region 154086	1341 bp upstream
Tssr154087	transcription start site region 154087	1120 bp upstream
Tssr154088	transcription start site region 154088	1091 bp upstream
Tssr154089	transcription start site region 154089	973 bp upstream
Tssr154090	transcription start site region 154090	913 bp upstream