rs221473178 SNP Detail

Summary

• ID
  rs221473178
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57171254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAACAGAG CTGAGGGCAC
  AGGTATGGGA GAAGATGGGG CTGGGGCGGA GGGGCTGGGC TCCAGGTAGG ATTAGGAAGA
  GGAAGTGAGG TCACTCAAGG AGAAGGGGAG GGTGTCTCTT GGATTAGAGC TGGAAGATTT
  TTTTACAAAT AGAGGCTAGA CAAATAGAGG AGAGACTCTG AGGTTTGGGG CTTTCCAAAT
  M
  ACATTGCAAA TTGGGACAGA AGCCCAGGTT GCCTGGGTTT TGTATCTTAC TAACATGCTT
  TAACACTAGA AAGGTGCATC TGTGCCCTGC CAGCTCTGGG TCATGCCAAA TCTGACAGGC
  TCAGCCTTCT CTCAAGGAGA TATTGTTTCC TACTATCACA CATACTAACT CTGCCCTCTT
  CTCCCTTGTG CGTAGCATCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377685774	MGP_WTSI_9_57111778	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221473178					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377685774	MGP_WTSI_9_57111778	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57171254 () rs orientation: forward

Symbol	Name	Function Class
1700017B05Rik	RIKEN cDNA 1700017B05 gene	1359 bp upstream
Cpgi21813	CpG island 21813	1069 bp distal
Gm68485	predicted gene, 68485	1293 bp downstream
Gm68491	predicted gene, 68491	473 bp upstream
Rr679623	regulatory region 679623	1935 bp distal
Rr679624	regulatory region 679624	869 bp distal
Rr679625	regulatory region 679625	1173 bp proximal
Tssr89769	transcription start site region 89769	1990 bp upstream
Tssr89770	transcription start site region 89770	1391 bp upstream
Tssr89771	transcription start site region 89771	1362 bp upstream
Tssr89772	transcription start site region 89772	1174 bp upstream
Tssr89773	transcription start site region 89773	1818 bp downstream
Tssr89774	transcription start site region 89774	1836 bp downstream