rs221482554 SNP Detail

Summary

• ID
  rs221482554
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148892516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATG AGGGGAATGG GGAGGGGCGC
  R
  GAGCAGGAAG GCAAGAGCAA GAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321719751	CHEV_5_149767282	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221482554					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148892516 () rs orientation: forward

Symbol	Name	Function Class
1810059H22Rik	RIKEN cDNA 1810059H22 gene	within coordinates
Gm15406	predicted gene 15406	within coordinates
Gm15409	predicted gene 15409	164 bp upstream
Gm52833	predicted gene, 52833	88 bp upstream
Rr378799	regulatory region 378799	1057 bp upstream
Rr625339	regulatory region 625339	1864 bp distal
Rr625340	regulatory region 625340	1078 bp distal
Rr625341	regulatory region 625341	973 bp distal
Rr625342	regulatory region 625342	464 bp proximal
Rr625343	regulatory region 625343	1099 bp proximal
Tssr54595	transcription start site region 54595	51 bp downstream