rs221485582 SNP Detail

Summary

• ID
  rs221485582
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69570547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATAGCTCTT TGTCATCTGC ACTGAAGACC ATAGGACATC
  TACTTATGTA GATGTTCCCA ACACTGTGTC CCAGGTATCA GTCCTGCTAA AAATCAGAGT
  Y
  CCCAGCTCCC ACAAGATAGG ATCTTTCTTT GCAGCCCAGG TGGGGCCTTG ATTAATTGTT
  CCATCTTAGC CTCCAAAATC ATAGGATTAG TGTGTGCCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323731033	CHEV_11_69493223	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221485582					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69570547 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3142	CpG island 3142	1546 bp proximal
Gm73989	predicted gene, 73989	1212 bp downstream
Rr450067	regulatory region 450067	1404 bp proximal
Senp3	SUMO/sentrin specific peptidase 3	within coordinates
Tssr108773	transcription start site region 108773	920 bp downstream