rs221487751 SNP Detail

Summary

• ID
  rs221487751
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101673877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGGCCAAG ACAGACCTCA
  TCCCATTCCA CAAACCTACT TAGTGGTCCC CTTTCCTTCT TATCCAGGCT TCTCCTATAG
  AGAATCCTGT GAGAGGTGGA TTGGATTGGT GAAGAGGTGG AGAGCTTTGA AATTCCAAAA
  GAAAGGTACC CACAGTGGAA GAATGGGGAA TGAATCCCTT AGGAAAAGAC CTCAAGAAAA
  W
  ATTCACTTTT GGTTTCTGGA GTATTTAGAG TATTAACACA AAAGGAGGTG AGAGCGAAGA
  TGGGGATGCT AATGCTTCCT GAATCTCAGA GACTGTAAGT CACCATGCCT CCTTCCACTG
  GCAGCCCTGC CAGCATCACC CTCAGGCTAA CTAACCTCAC CAAAACACCA CAGCTAGAAT
  CCAACTAGGA CATCTGCTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384487347	MGP_WTSI_11_101644365	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221487751					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384487347	MGP_WTSI_11_101644365	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101673877 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3886	CpG island 3886	1015 bp proximal
Etv4	ets variant 4	within coordinates
Rr457076	regulatory region 457076	668 bp proximal
Rr457077	regulatory region 457077	1906 bp proximal
Tssr110962	transcription start site region 110962	1234 bp downstream
Tssr110963	transcription start site region 110963	1271 bp downstream
Tssr110964	transcription start site region 110964	1376 bp downstream
Tssr110965	transcription start site region 110965	1409 bp downstream
Tssr110966	transcription start site region 110966	1465 bp downstream
Tssr110967	transcription start site region 110967	1557 bp downstream
Tssr110968	transcription start site region 110968	1615 bp downstream
Tssr110969	transcription start site region 110969	1762 bp downstream
Tssr110970	transcription start site region 110970	1790 bp downstream