rs221498309 SNP Detail

Summary

• ID
  rs221498309
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:25592637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGGCGTT GGGAGTTTAG
  GGGTGGAGAG AGGAACGCAT CGCCCCCTGC GGTCTAAAGT GCACCCCCCG GAGCTAAGAG
  GGTCGCCAAC GCCCTGACCC AGCTTGCCTG GCCCTTCTTG GAGCACGGAG AGAAGTGGGA
  AAGAGAAGCT GGATTCGATA GGTTCAGCCT AGGGTGACCA GACAGAACTC CAGCGCCCTC
  R
  CCCTTCAGTC ACACAGCAAC CCGTAGGTAT CAATCCGGTG CTGGGGCCGA TGAGGAAACC
  GAGACTCCAA GACATTAGGT AACTTGTTCT GGGTCCCCAG TCAGTAGAGG GCAGGTCTGT
  CCGGTCTAAC GCAGGCCTCC CTCGTGGAGA CATTGACATT TAAATATAAG TAACGCCAGG
  CAGACAAAGT GGACTCAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373995057	MGP_WTSI_8_26213093	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221498309					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373995057	MGP_WTSI_8_26213093	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:25592637 () rs orientation: forward

Symbol	Name	Function Class
5830408C22Rik	RIKEN cDNA 5830408C22 gene	within coordinates
Cpgi20179	CpG island 20179	within coordinates
Gm45745	predicted gene 45745	868 bp downstream
Gm63713	predicted gene, 63713	846 bp downstream
Plekha2	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	Intron
Rr368503	regulatory region 368503	397 bp upstream
Rr661038	regulatory region 661038	1395 bp distal
Rr661039	regulatory region 661039	879 bp distal
Rr661040	regulatory region 661040	647 bp distal
Rr661041	regulatory region 661041	788 bp distal
Rr661042	regulatory region 661042	283 bp distal
Rr661043	regulatory region 661043	within coordinates
Rr661044	regulatory region 661044	97 bp proximal
Rr661045	regulatory region 661045	1246 bp proximal
Rr661046	regulatory region 661046	1854 bp proximal
Tssr2524	transcription start site region 2524	994 bp downstream
Tssr76668	transcription start site region 76668	1517 bp downstream
Tssr76669	transcription start site region 76669	735 bp downstream
Tssr76670	transcription start site region 76670	668 bp downstream
Tssr76671	transcription start site region 76671	864 bp upstream
Tssr80677	transcription start site region 80677	1013 bp upstream
Tssr80678	transcription start site region 80678	908 bp upstream
Tssr80679	transcription start site region 80679	829 bp upstream
Tssr80680	transcription start site region 80680	452 bp upstream
Tssr80681	transcription start site region 80681	427 bp upstream
Tssr80682	transcription start site region 80682	233 bp upstream
Tssr80683	transcription start site region 80683	51 bp upstream
Tssr80684	transcription start site region 80684	393 bp downstream