rs221500766 SNP Detail

Summary

• ID
  rs221500766
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19040235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAATAGT TTCCAGCCAG
  AGCCAGTCAG GATGATGGCA TCTCAGCCAA GGGCTGAAAC TTGAGGCTAT CAAGTTGGGG
  GAGGAGGGCT GAACTACACA GGTAGATCCC CAGCTCAGGA AAAAAAAATG GAGGCAGGAA
  GGCAAAATGG ATTATTATTT AGTGAAGGAA AGAAGGTGAG AGAATTACCT CCTCTAGCTT
  K
  TCTCCTTAGG CTGAGAGAAA GCCAGGAGGG TGACATGTGG GGACATATTC AGGGAAAGTG
  GGGAACAGTC GAAAGTAAGT GGGCATGGGT CTGAGCATGC ATATGGAGCC ACTCCATCAG
  CCTATACTGA CCCCTGTTCC CTAAGAGGGG GTTTCCTCGT TTAGGACACA GGCACAGTGA
  GAAACGGGGG AAGAACAAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370746348	MGP_WTSI_7_19891659	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221500766					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370746348	MGP_WTSI_7_19891659	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19040235 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18466	CpG island 18466	943 bp distal
Cpgi18467	CpG island 18467	1030 bp proximal
Cpgi18468	CpG island 18468	1950 bp proximal
Fosb	FBJ osteosarcoma oncogene B	within coordinates
Rr643087	regulatory region 643087	624 bp distal
Rr643088	regulatory region 643088	1876 bp proximal
Tssr2107	transcription start site region 2107	1105 bp downstream
Tssr64824	transcription start site region 64824	1999 bp downstream
Tssr64825	transcription start site region 64825	1511 bp downstream
Tssr64826	transcription start site region 64826	927 bp upstream
Tssr64827	transcription start site region 64827	1019 bp upstream
Tssr70898	transcription start site region 70898	1864 bp upstream
Tssr70899	transcription start site region 70899	1784 bp upstream
Tssr70900	transcription start site region 70900	883 bp downstream