rs221503207 SNP Detail

Summary

• ID
  rs221503207
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40555793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCCGACC TCCTTCTGTA
  GAGAAGGCGA ATAGTGGTGG CAAGATGAGA AACTTTGAAA CCCTCTTCCT CCAGATATGA
  TTCTCCCTTC TACTACTGAA CAGGTATGTG GTCATTGTTT CATAACGGGC ACCGTTGCTA
  TGAGTGATGC AACATTTGGT TTTCTACTGG GACAATAAGA ATGACAGCAC ACATGTTTTA
  Y
  AGAATGACAA ACTTGAGTTT TACATTTGCT GGTATCTGTC AGTCATTTTT ACTCCCATAT
  GCAGAATTGG CAGCCATGTT GGTTTAAGTT GGCCAGTGCT CAACAAGTAC GATGCTCTAC
  TCTTGGATGA TCTCTTTGGA ATTCCTGATG CATTTGGGTA ATGGTAGAAT GAGATTGTGT
  AGTCTTTTAA AAACAGACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349352583	MGP_WTSI_1_40573478	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221503207					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349352583	MGP_WTSI_1_40573478	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40555793 () rs orientation: forward

Symbol	Name	Function Class
Il18rap	interleukin 18 receptor accessory protein	within coordinates
Rr410075	regulatory region 410075	1261 bp distal
Rr410076	regulatory region 410076	1150 bp distal
Tssr65	transcription start site region 65	1131 bp downstream
Tssr6477	transcription start site region 6477	1202 bp downstream
Tssr6478	transcription start site region 6478	1175 bp downstream
Tssr6479	transcription start site region 6479	1150 bp downstream
Tssr11438	transcription start site region 11438	1403 bp upstream
Tssr11439	transcription start site region 11439	180 bp upstream
Tssr11440	transcription start site region 11440	159 bp upstream
Tssr11441	transcription start site region 11441	151 bp upstream
Tssr11442	transcription start site region 11442	132 bp upstream
Tssr11443	transcription start site region 11443	104 bp upstream