rs221522446 SNP Detail

Summary

• ID
  rs221522446
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19194158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGATCAT AGGACTAGCT
  ATTAAGCACG AACATTTTTA AAAGTTAAAT TATGCAAACA TGTAATTAAG CAAATTGTAT
  TAAAAATTGG CAGGGGGAGG GGGTGGGTGC TGGAGAAATG GCTCAGCAGT TAGGAACACT
  GGCTACTCTT CCAGAGGACC TGGGTTCAGT TCCCAGCCCT CCCCACCCCC CACACACACA
  Y
  ACATGGTGGC TCACAACCAT CTGTAACTGC AGGTCTATGG GACCTGACAC CCTCTTCTGG
  CTTCCCCAGT GACTATGTGC ATGTACACAC ACACACACAC ACACACACAC ACACACACAC
  ACACGAGGCA GAACACCCAA AAACATAAGT AAACATAAAA GCTATAAAAG TAAAGAAAAG
  GCCCAAAGTG AGAGTAAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370749849	MGP_WTSI_7_20045582	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221522446					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370749849	MGP_WTSI_7_20045582	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19194158 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18489	CpG island 18489	1160 bp distal
Gm23099	predicted gene, 23099	564 bp downstream
Mark4	MAP/microtubule affinity regulating kinase 4	1412 bp upstream
Rr400149	regulatory region 400149	1176 bp downstream
Rr643146	regulatory region 643146	1423 bp distal
Rr643147	regulatory region 643147	922 bp distal
Rr643148	regulatory region 643148	1299 bp proximal
Rr643149	regulatory region 643149	1431 bp proximal
Tssr64858	transcription start site region 64858	1298 bp downstream
Tssr70918	transcription start site region 70918	1548 bp upstream
Tssr70919	transcription start site region 70919	1494 bp upstream
Tssr70920	transcription start site region 70920	1457 bp upstream
Tssr70921	transcription start site region 70921	1433 bp upstream
Tssr70922	transcription start site region 70922	1377 bp upstream
Tssr70923	transcription start site region 70923	980 bp upstream