rs221522994 SNP Detail

Summary

• ID
  rs221522994
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34933417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCCTTAT CGAACCAAAA
  GCCCAAGCGT GTTCCACTGT GTGGGTTAAT GAAAGTACGT TCTTTGTCCC TTTTCAGCTT
  AGGACATTTT TTTTTCTATT ACATTTACCT ATTTGTTGTG AACACATTTG TGCTCATACG
  TGAGCCGCGG CGTACATGTG GACCCACAGG CCGGAGGACA GTTTTCGAGG GTCAGTTCTC
  M
  TCTTCCACCC TGTTAGACCC AGGAATTGAA CTCAGGACGT CCAGGGTTAG CAACAAGGAC
  ATTTATCCAC TGAGCCGTCT CGCCAGTCCT TAAGATGGTT TTAAATGGTT TATAAGGTTG
  TAACTTCAAT TGTGAGTCAA AATATCTGCA TTAGGAACAC CGCCTCACGT GGCTCCTGCA
  TTTTCTAAAG CTCGCTGGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss370971357	MGP_WTSI_7_36019011	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs221522994					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370971357	MGP_WTSI_7_36019011	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34933417 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18864	CpG island 18864	567 bp proximal
Gm38989	predicted gene, 38989	within coordinates
Gm73040	predicted gene, 73040	1357 bp upstream
n-TTagt9	nuclear encoded tRNA threonine 9 (anticodon AGT)	778 bp downstream
Rr645337	regulatory region 645337	607 bp distal
Rr645338	regulatory region 645338	within coordinates
Rr645339	regulatory region 645339	639 bp proximal
Rr645340	regulatory region 645340	701 bp proximal
Rr645341	regulatory region 645341	1368 bp proximal