rs221540573 SNP Detail

Summary

• ID
  rs221540573
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93030598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACCCCACCC CTCACCCTTG TGCAGGGACA
  ACTCCTTGCC CTGTGTTTCT TGGCCTCTAG ACTCTAACAG GCAGAGTCTA GAGTAAGTTT
  TAGGGTCTGG GCTGAGTCAA GGTGAGTTCC TCTGCCAGGA AGCCCTTTCT AGGAGGTTGT
  R
  TCGGCCCCAG CAGGGGCTCT CAGCTTCTCC CCATCCAGAA ACCCGATGTG TGAGTCCCTC
  ATcacacacg cacacacaca cacacacaca cacacacaca cacacacaca cacacacaca
  cGGTGTTTCT AGAGATCCAG TTGAGGACAT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320395114	CHEV_2_93040410	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221540573					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93030598 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr561117	regulatory region 561117			1189 bp distal
Rr561118	regulatory region 561118			626 bp distal
Rr561119	regulatory region 561119			472 bp proximal
Rr561120	regulatory region 561120			1818 bp proximal
Trp53i11	transformation related protein 53 inducible protein 11			mRNA-UTR
				Noncoding-Transcript-Variant
Tspan18	tetraspanin 18			1507 bp downstream
Tssr18985	transcription start site region 18985			1695 bp downstream
Tssr18986	transcription start site region 18986			414 bp downstream
Tssr18987	transcription start site region 18987			8 bp upstream
Tssr18988	transcription start site region 18988			40 bp upstream
Tssr18989	transcription start site region 18989			1324 bp upstream