About   Help   FAQ
rs221540711 SNP Detail
Summary
  • ID
    rs221540711
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr18:82601634 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GTTTCAGTCC AGGTACACTG
TGTTTTCTAG AACAGAGATT CTAAGACTTC CCAAGAAGTC AGTGCTCTGC AGGGCCCAGG
CATAGCTCTG CCCATGATAC ACATAGGAAA AACTGGGTCA GGTCAAGAGA GCTCTCCGGG
TGAGGCCAGG GCCCCTATCC TGGAGGAGGA CATCGCCCAG GTCTGCATCC CTGGTTTCCA
Y
GGCCGCTGCT GTCGCTGTAG GCTGCGCTAC CTCTCAAGCT GATTGGGCAC ATCTCATTTT
TAATTGCAAA CTTGGTCTCT AGAAAACCCA TCAATTCAGG GTTTCAAGAG CCTTATCATG
CCCGCATTCA CACACGCGCC CGTGTGCAGC TAGTGTCTTT TGGTAGCACT GGCAGGGCGC
TTTCCCCAAG TGGGGGGCAG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss401436717 MGP_WTSI_18_82752901 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs221540711 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss401436717 MGP_WTSI_18_82752901 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr18:82601634 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gm58829 predicted gene, 58829 1113 bp downstream
Mbp myelin basic protein within coordinates
Rr541827 regulatory region 541827 156 bp proximal
Tssr152152 transcription start site region 152152 599 bp upstream
Tssr152153 transcription start site region 152153 627 bp upstream
Tssr152154 transcription start site region 152154 741 bp upstream
Tssr152155 transcription start site region 152155 779 bp upstream
Tssr152156 transcription start site region 152156 852 bp upstream
Tssr152157 transcription start site region 152157 903 bp upstream
Tssr152158 transcription start site region 152158 960 bp upstream
Tssr152159 transcription start site region 152159 990 bp upstream
Tssr152160 transcription start site region 152160 1040 bp upstream
Tssr152161 transcription start site region 152161 1057 bp upstream
Tssr152162 transcription start site region 152162 1073 bp upstream
Tssr152163 transcription start site region 152163 1098 bp upstream
Tssr152164 transcription start site region 152164 1138 bp upstream
Tssr152165 transcription start site region 152165 1191 bp upstream
Tssr152166 transcription start site region 152166 1257 bp upstream
Tssr152167 transcription start site region 152167 1272 bp upstream
Tssr152168 transcription start site region 152168 1307 bp upstream
Tssr152169 transcription start site region 152169 1368 bp upstream
Tssr152170 transcription start site region 152170 1449 bp upstream
Tssr152171 transcription start site region 152171 1509 bp upstream
Tssr152172 transcription start site region 152172 1616 bp upstream
Tssr152173 transcription start site region 152173 1639 bp upstream
Tssr152174 transcription start site region 152174 1657 bp upstream
Tssr152175 transcription start site region 152175 1680 bp upstream
Tssr152176 transcription start site region 152176 1889 bp upstream
Tssr154083 transcription start site region 154083 708 bp downstream
Tssr154084 transcription start site region 154084 732 bp downstream
Tssr154085 transcription start site region 154085 1004 bp downstream
Tssr154086 transcription start site region 154086 1559 bp downstream
Tssr154087 transcription start site region 154087 1774 bp downstream
Tssr154088 transcription start site region 154088 1814 bp downstream
Tssr154089 transcription start site region 154089 1925 bp downstream
Tssr154090 transcription start site region 154090 1997 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory