rs221540988 SNP Detail

Summary

• ID
  rs221540988
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:55420325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGGAAAGGG TTCTAGTATT CTTACCTCCA
  GGTAGGTAAT AAGAAAGACC AAGAAAGGCT GGAAGGTTTG CAATGTGCCA CCCAGGGCGA
  GGGACACAGG ACACAGAACA CCTGCAAGGG CAGATGAACA GGTGTAAGTC GCTTGGGGAG
  R
  AGCAGGGCTT TGCAGCTTCA GACTTGTGTG TGGAAGGGTT CATTCTCGTG GTTGGCACAG
  CTCATCAAGA CACACACCCT CCAGTTCCTG TTGTAGCTGA GTGGTCATGT CCTCGCTGCT
  CTGCTCAAAG TCAAAAGACC TTAAAGTCCT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319728283	CHEV_1_55438010	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221540988					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:55420325 () rs orientation: forward

Symbol	Name	Function Class
Cpgi265	CpG island 265	607 bp proximal
Gm8531	predicted gene 8531	29 bp downstream
Rr16609	regulatory region 16609	1876 bp proximal
Rr33932	regulatory region 33932	1883 bp proximal