rs221541325 SNP Detail

Summary

• ID
  rs221541325
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:57762608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCCGAGG CCGGGCTGGG
  GCAGAGGGAC GGGGGGAGGA CGGCGGGACG GCCCGGAGAG GCGTCTCACA GGCACTCGCA
  GCCCGCCGCG CAGCAGCCCG GCAGGCACAC GCACACGTGC ACGCGCGCCC CGCACCCGCC
  CCCCGCGCGG GCTCCGGCTC TGGGCGGCGG CGGCGGCGGG GGCCGGGGGC GCGCGGGCCG
  G
  CGGCGGGCCG GGCCCCGGGG ACCGCGCGGG CGGCGGGCGG GCGGGGACGG CGCTCGGGGG
  CCGGCCCGCG CGGCGCCCAT GCTCGGGGAG GGCCTCACGG TGTGCGGAGC GCCGGGCGGG
  TCCCGCGACG CTGAGCTCGG CCTGTCCCGC AGGTCTGGAT GCTCGCGGTC GGCTTCCTGC
  TGGCACTGGC GCCGGGCCGC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	RIIIS/J	SJL/J
ss391194820	MGP_WTSI_14_58143988	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	RIIIS/J	SJL/J
rs221541325					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391194820	MGP_WTSI_14_58143988	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:57762608 () rs orientation: forward

Symbol	Name	Function Class
AU020094	expressed sequence AU020094	316 bp distal
Cpgi6542	CpG island 6542	within coordinates
Il17d	interleukin 17D	within coordinates
Rr404129	regulatory region 404129	339 bp upstream
Rr492824	regulatory region 492824	659 bp distal
Rr492825	regulatory region 492825	364 bp distal
Tssr125870	transcription start site region 125870	347 bp downstream
Tssr125871	transcription start site region 125871	46 bp downstream
Tssr128966	transcription start site region 128966	305 bp downstream
Tssr128967	transcription start site region 128967	348 bp downstream
Tssr128968	transcription start site region 128968	418 bp downstream