rs221544233 SNP Detail

Summary

• ID
  rs221544233
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74497752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAACGGGCG GGGGTGGGTG
  GTGGCTGCAA AAAGCTAGAG GCCGGTATGC TGTGGGCGAG GCGCAGAAGA TTCGTGGCAC
  TCTATTGAGT GGCTTTCTCC TCCCGCGCTG GTACGGAGTC TTTTGGGCTG GGCAGGAGGA
  GGCCAAGCTG AAGCTAAGGC CAGCCTGGCA AAGTGACTGC CGGCTGGCCA AGAGCAGAGA
  Y
  GTGAACCGAA CATCTGTGGA CTTCCTAGTT GCGCCGATTG TCAGGCTTGC GGCTTCGAGA
  TGAATTCTAA GTCTCTGATG CTGCCCCAAG ACTGTTTCGT GAGTATTTTT GTGGGCCGAT
  GGTGCTGTAT AGGAAGGATC TACTCCGACT GATGTCCTAT GTGTGGAATA CTTTTACCCG
  TTCGTTAGGT ATGTTCAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320348107	CHEV_2_74505465	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221544233					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74497752 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11788	CpG island 11788	within coordinates
Cpgi11789	CpG island 11789	219 bp proximal
Gm31790	predicted gene, 31790	within coordinates
Hoxd13	homeobox D13	902 bp upstream
Igs15	intergenic site 15	within coordinates
Rr559337	regulatory region 559337	498 bp distal
Rr559338	regulatory region 559338	412 bp proximal
Tssr18389	transcription start site region 18389	135 bp downstream
Tssr18390	transcription start site region 18390	799 bp upstream