rs221551659 SNP Detail

Summary

• ID
  rs221551659
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:70109276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGA AAGCCACGTT TATATTTCAC
  W
  CTTAAGTGAA ACGTCATGCC ATTTA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325235727	CHEV_16_70312633	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221551659					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:70109276 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8364	CpG island 8364	1448 bp proximal
Gbe1	1,4-alpha-glucan branching enzyme 1	1561 bp upstream
Rr517848	regulatory region 517848	1071 bp proximal
Tssr138939	transcription start site region 138939	1579 bp upstream
Tssr138940	transcription start site region 138940	1610 bp upstream
Tssr138941	transcription start site region 138941	1623 bp upstream
Tssr138942	transcription start site region 138942	1669 bp upstream
Tssr138943	transcription start site region 138943	1703 bp upstream
Tssr138944	transcription start site region 138944	1731 bp upstream