rs221553028 SNP Detail

Summary

• ID
  rs221553028
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157402950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAA AAAAGAAAGA AAGAAAGAAA
  R
  AAAGGGGCAA ATCATTTTAT GGAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320587262	CHEV_2_157386766	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221553028					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157402950 () rs orientation: forward

Symbol	Name	Function Class
Blcap	bladder cancer associated protein	within coordinates
Cpgi12575	CpG island 12575	436 bp distal
Cpgi12576	CpG island 12576	430 bp proximal
Gm56190	predicted gene, 56190	1331 bp downstream
Nnat	neuronatin	within coordinates
Rr568543	regulatory region 568543	890 bp distal
Rr568544	regulatory region 568544	1317 bp proximal
Tssr721	transcription start site region 721	1411 bp downstream
Tssr21268	transcription start site region 21268	911 bp downstream
Tssr21269	transcription start site region 21269	426 bp downstream
Tssr21270	transcription start site region 21270	355 bp downstream
Tssr21271	transcription start site region 21271	241 bp downstream
Tssr21272	transcription start site region 21272	202 bp downstream
Tssr21273	transcription start site region 21273	445 bp upstream
Tssr21274	transcription start site region 21274	687 bp upstream
Tssr21275	transcription start site region 21275	742 bp upstream
Tssr21276	transcription start site region 21276	843 bp upstream
Tssr21277	transcription start site region 21277	872 bp upstream
Tssr21278	transcription start site region 21278	907 bp upstream
Tssr21279	transcription start site region 21279	999 bp upstream
Tssr21280	transcription start site region 21280	1078 bp upstream
Tssr21281	transcription start site region 21281	1125 bp upstream
Tssr21282	transcription start site region 21282	1250 bp upstream
Tssr21283	transcription start site region 21283	1264 bp upstream
Tssr27183	transcription start site region 27183	147 bp upstream
Tssr27184	transcription start site region 27184	57 bp upstream
Tssr27185	transcription start site region 27185	822 bp downstream
Tssr27186	transcription start site region 27186	949 bp downstream