rs221554243 SNP Detail

Summary

• ID
  rs221554243
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18913222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGACTCTC CTGGTCTTTG
  GAGCGCTCCC CCGCACCCCT CCCGTCCCGT CCCGTCCCGT CCCGTCCCTC CCCCCCCCCC
  CCCCCCCCAC CTCCTGGTCC CCTGCAGCCC GCATCTCCTT GGCTTTCTAG ATGATAATCT
  GTCCGGCACC AGTGGCATGG AGGTGGACGA CCGCGTGTCG GCGCTGGAGC AGCGGCTGCA
  R
  CTGCAAGAAG ATGAACTGGC GGTCCTAAAG GCGGCGCTGG CGGACGCGCT GCGTCGCCTG
  CGGGCATGCG AAGAGCAAGG CGCGGCGCTG CGTGCGAGGA GCACCCCTAA GGGCCGGGCG
  CCCCCGCGTC TGGGCACCAC CGCCTCGGGT ATTTTGGTCG GGGTGGAGGG TATGAGGACG
  ATGCACAAAG GCATGACCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370743480	MGP_WTSI_7_19764646	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	G	G	G	G	A	G	A	G	G	G	G	G	G	G	G	A	G	A	G	G	G	G	A	G	G	G	A	G	G	A	G	A	G	A	G	A	G	G	A	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221554243					SNP	A	G	G	G	G	G	A	G	A	G	G	G	G	G	G	G	G	A	G	A	G	G	G	G	A	G	G	G	A	G	G	A	G	A	G	A	G	A	G	G	A	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370743480	MGP_WTSI_7_19764646	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18913222 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18451	CpG island 18451	1003 bp distal
Cpgi18452	CpG island 18452	within coordinates
Cpgi18453	CpG island 18453	1779 bp proximal
Eml2	echinoderm microtubule associated protein like 2	within coordinates
Rr155272	regulatory region 155272	422 bp distal
Rr167138	regulatory region 167138	within coordinates
Rr167139	regulatory region 167139	1578 bp proximal
Tssr64795	transcription start site region 64795	1058 bp downstream
Tssr64796	transcription start site region 64796	260 bp downstream
Tssr64797	transcription start site region 64797	1865 bp upstream
Tssr64798	transcription start site region 64798	1914 bp upstream
Tssr64799	transcription start site region 64799	1996 bp upstream