rs221555578 SNP Detail

Summary

• ID
  rs221555578
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45017939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTGCTGG CGCCGACGGG
  CAGATCGCAT CTTCTCGAAG CGGGCTTCCA TCTCCTCCAG CACCCGAGGA GTGTAGCGCA
  CCACCAGTTT CACTGAGCCC TGTGCAGCCT TCAGGAGTTC CACCGCCTTT TCATGGTGTT
  CGCCTTCCAC ACTCTGCAGG GCAGGCCTCG CACAGACTGC TGGCCCAAAC CGCTGCCCTT
  W
  CCACCCTACC CAGGACATGG GACCAGTGGA TAGTGACACG GCTGCTGGGG TCAAGTCTCC
  AAGGCCTCAT ATCCCTCTAG TGGATCACCA ACTTTAGGCA CAGCACCCAC AACCTAAAAA
  CTGCATGTCA AGATAGCTTT GAGTCCCAGT GTCCTCAATG AACCAGGCCA CTGAACCTGT
  CCCAAAAAAG TCTGTCTACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371175693	MGP_WTSI_7_52623885	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221555578					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371175693	MGP_WTSI_7_52623885	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45017939 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19049	CpG island 19049	643 bp distal
Cpgi19050	CpG island 19050	1330 bp proximal
Gm45619	predicted gene 45619	within coordinates
Gm71276	predicted gene, 71276	783 bp downstream
Lin7b	lin-7 homolog B, crumbs cell polarity complex component	within coordinates
Mtag2	metastasis associated gene 2	567 bp downstream
Ppfia3	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3	1496 bp upstream
Rr400310	regulatory region 400310	1271 bp downstream
Rr646420	regulatory region 646420	1812 bp distal
Rr646421	regulatory region 646421	1224 bp distal
Rr646422	regulatory region 646422	328 bp distal
Tssr72376	transcription start site region 72376	1675 bp upstream