rs221556983 SNP Detail

Summary

• ID
  rs221556983
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:54945492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGGGAAGAG GGGCTCTCCT CACACTCAGG
  CCACAGCCAT GGTCTCAGTT TTAATTGCCC TGAGGACCCC TCTACCCATC TTCTCTTCCC
  TGAGCGGATA TGTAGGTCAC CAACCAGCAA GTGGATCAAA TCTCCTAGGT AGAGACCTTC
  R
  ACCTTGGGAA CGTTTAGAGC AGATACAGGT GCTGCAAGAT GGAGCGGACA TTGAAGAACG
  CCACCGATGC TAAGGAAAGA GCCCCTGCCC ACATGCAGTT CTCATGTGCA TTTTGTGCAG
  TCAGCAATTC TGTTTTCTCC ACAGCCTTCA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319726866	CHEV_1_54963177	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221556983					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:54945492 () rs orientation: forward

Symbol	Name	Function Class
Ankrd44	ankyrin repeat domain 44	within coordinates
Rr1418	regulatory region 1418	within coordinates
Rr411098	regulatory region 411098	375 bp distal
Rr411099	regulatory region 411099	within coordinates
Tssr11696	transcription start site region 11696	831 bp downstream