rs221562135 SNP Detail

Summary

• ID
  rs221562135
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:108534699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCAGACA GGCACGTGTC
  CCAAGGTTTT CCTACATACT GGTTCATAAA CCCTAGATAT GCTCAGCTCC AAGTTCTACC
  CCCACCCCCA ACCCCCACCT CACTCCTCTG ATTTTTCATT TGGACACAGA CTGTTGTTGT
  ATTATGTGTC CGTCGCTAAC CTTCAAGATG AAGAGAAGCC AACTATCTGA AGAGGTTGGC
  R
  TCCCAGGCTT ACGGGAGGGT GGCAGGAAGT GAAGCCCTCA GTGGTTTGGT CACCTGCCTG
  TGGGGCAGGA CTCACAGGGA GCTGAGAAGA CTCCTCCAGG CTGGTCTCTG CAGAGGCCCA
  TGACCAGCAC TCATTCCAGA GCCGAGGCAG GGGAAACTAG AGAACATGCC TGCTTTGTGG
  AAAGTAGTAG ACCTGAGTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322388646	CHEV_7_116079006	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221562135					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:108534699 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19551	CpG island 19551	583 bp distal
Eif3f	eukaryotic translation initiation factor 3, subunit F	within coordinates
Rr400539	regulatory region 400539	1034 bp downstream
Rr652952	regulatory region 652952	1065 bp distal
Rr652953	regulatory region 652953	1322 bp distal
Tssr68456	transcription start site region 68456	1062 bp downstream
Tssr68457	transcription start site region 68457	964 bp downstream