rs221566814 SNP Detail

Summary

• ID
  rs221566814
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:97095965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTGTATA GCCCTGGCTG
  TCCTGGAACT AGCTGTTGAC CAGGCTGGCC TCGAACTCAG ATTTGCCTGT CTCTGCTTTT
  TTTTTTTTTT TAAATTGGGG GGGAGGGGGT CTGAGACAGG GTTTCTCTGT GTAGCCTGGA
  CTGTCCTGCC CTCAAATTTA GAAATCCGCC TGCCTCTCTC TCCCAAGTGC TGGGATTAAA
  R
  GCATGCGCCA CCACTGCCTG TCTGTCTCTC AACTGCTGGA ATTAAAGGTG TGTGCCTCCG
  CCACTGCCAC CACCACCACC ACCACCACCA CCACCACCAC CACCACCACC ACCTTTAAAA
  AAAATCCCGT GGTAAAGGTG TGCCTGTTGG CTTGTGCCTA TAATCCCAAT ACTGTGGAGA
  TGAAGGCAGG AGGGTCACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MOLF/EiJ	NZW/LacJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ	SWR/J
ss384386168	MGP_WTSI_11_97066453	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MOLF/EiJ	NZW/LacJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ	SWR/J
rs221566814					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384386168	MGP_WTSI_11_97066453	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:97095965 () rs orientation: forward

Symbol	Name	Function Class
Npepps	aminopeptidase puromycin sensitive	703 bp downstream
Rr455696	regulatory region 455696	1154 bp distal
Tssr110404	transcription start site region 110404	1862 bp downstream