rs221569904 SNP Detail

Summary

• ID
  rs221569904
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:55793004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATGTAGA AAATAAAATA
  TTAAAAGTAT CTGAGGTATG AGGGTATGAC TAGCCTAGTA ACAAGATCTT TTTCCCAAAC
  AACCATTAGC TTGTGTAAAA AAATTAGTAC ATGGAATGTA GGCCTTTGCA AGGACACAAG
  TTTAAAGTTT AGCTTTTCTT AGGAAAGTCT GATTAAAGGG AAAAAAAAAA ACCAAAAGAC
  Y
  AGTAACAGTT CCTGGGTTTT CTCTCTCTCT CTTTTTTTTT TTTTTGTTTG TTTGGGTTTT
  TCGAGACAGG GTTTCTCCGT ATATTAGAGC TCACTGTCCT GGAACTCACT TTGTAGACCA
  GGCTGGCTCG GGACTCAGAA ATCCACCTGC CTCTGCCTCC CAGTGCGCCA CCACGCCTGG
  CTGTAACAGT TCCTGTTACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325189942	CHEV_16_55972754	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221569904					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:55793004 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8325	CpG island 8325	750 bp proximal
Gm28037	predicted gene, 28037	within coordinates
Rpl24	ribosomal protein L24	1206 bp downstream
Rr404882	regulatory region 404882	919 bp upstream
Rr517154	regulatory region 517154	42 bp distal
Rr517155	regulatory region 517155	107 bp proximal
Rr517156	regulatory region 517156	436 bp proximal
Rr517157	regulatory region 517157	1082 bp proximal
Rr517158	regulatory region 517158	1297 bp proximal
Rr517159	regulatory region 517159	1966 bp proximal
Tssr138799	transcription start site region 138799	1145 bp upstream
Tssr138800	transcription start site region 138800	1170 bp upstream
Tssr138801	transcription start site region 138801	1196 bp upstream
Tssr138802	transcription start site region 138802	1240 bp upstream
Tssr141546	transcription start site region 141546	1872 bp downstream
Tssr141547	transcription start site region 141547	1900 bp downstream
Zbtb11	zinc finger and BTB domain containing 11	1242 bp upstream
Zbtb11os1	zinc finger and BTB domain containing 11, opposite strand 1	627 bp downstream