rs221572199 SNP Detail

Summary

• ID
  rs221572199
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:118308021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGC TGGGGGACAA GGCAAGACCC
  Y
  CAGAACCACC CTGATGGCTC TCAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323870300	CHEV_11_118278509	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221572199					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:118308021 () rs orientation: forward

Symbol	Name	Function Class
Cant1	calcium activated nucleotidase 1	within coordinates
Cpgi4233	CpG island 4233	1366 bp proximal
Gm72450	predicted gene, 72450	1892 bp upstream
Rr403174	regulatory region 403174	1680 bp upstream
Rr461043	regulatory region 461043	1412 bp distal
Rr461044	regulatory region 461044	911 bp distal
Rr461045	regulatory region 461045	737 bp proximal
Rr461046	regulatory region 461046	1818 bp proximal
Rr461047	regulatory region 461047	1903 bp proximal
Tssr112167	transcription start site region 112167	1371 bp upstream
Tssr112168	transcription start site region 112168	1354 bp upstream
Tssr112169	transcription start site region 112169	1761 bp downstream
Tssr112170	transcription start site region 112170	1823 bp downstream
Tssr112171	transcription start site region 112171	1921 bp downstream