rs221572738 SNP Detail

Summary

• ID
  rs221572738
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78378494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTTCTCT GGCCACCTCT
  CCAGAGACAC ACACATTCAC AAAGACACAC ACACACACAC ACACACACAC ACACACACCA
  CTGTTCACCT CTTGCTGTTC AGTTCAGCTG AGGAGTGTGT GAAAGAAAGG GGACCTTCAA
  AGGTAGTTCT GCCTTCCTCA GCCACCCACC TTGGCCCTGA AGTACTGTAA ACACAGCTAA
  Y
  GGTGGGAAGC TCCTACCTCA GGCAGCCTCG GAGACGGAGC CCCATGCCTG GCGATGTCCT
  TAACCTCTCT AGCCACTCGG TAATGTCAGA GACAAATCTA AGCTAGAACT CTACCTCTGA
  CCTCCAGCCT AGGGCCCTCA GAAACCTGTC AATCAACATA GCTGACTGGA CAGCCAGGTC
  CCAGGGGGAG ATTCCTTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394655161	MGP_WTSI_15_78324724	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221572738					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394655161	MGP_WTSI_15_78324724	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78378494 () rs orientation: forward

Symbol	Name	Function Class
Il2rb	interleukin 2 receptor, beta chain	within coordinates
Rr505292	regulatory region 505292	549 bp distal
Rr505293	regulatory region 505293	302 bp distal
Rr505294	regulatory region 505294	492 bp proximal
Rr505295	regulatory region 505295	561 bp proximal
Rr505296	regulatory region 505296	967 bp proximal
Tssr131958	transcription start site region 131958	434 bp downstream
Tssr131959	transcription start site region 131959	412 bp downstream
Tssr135223	transcription start site region 135223	677 bp upstream
Tssr135224	transcription start site region 135224	547 bp upstream
Tssr135225	transcription start site region 135225	64 bp downstream
Tssr135226	transcription start site region 135226	78 bp downstream
Tssr135227	transcription start site region 135227	743 bp downstream
Tssr135228	transcription start site region 135228	765 bp downstream
Tssr135229	transcription start site region 135229	918 bp downstream
Tssr135230	transcription start site region 135230	947 bp downstream