rs221577530 SNP Detail

Summary

• ID
  rs221577530
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23791792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGT ACAGAGAGAG AGAGAGAGCT
  Y
  GGGACTACTT AGTGCTCAGC CCTAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321489819	CHEV_5_23092612	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221577530					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23791792 () rs orientation: forward

Symbol	Name	Function Class
Rr117577	regulatory region 117577	9 bp proximal
Rr117578	regulatory region 117578	1609 bp proximal
Srpk2	serine/arginine-rich protein specific kinase 2	within coordinates
Tssr1438	transcription start site region 1438	within coordinates
Tssr50280	transcription start site region 50280	167 bp upstream