rs221577542 SNP Detail

Summary

• ID
  rs221577542
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:41495930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGGGGTA AGCAGCAGCT
  TATTCAAGGT CACCCAGCTG ACTGACAAAC GAAGACTGCG AATATGGCTC CCGGAAGAAT
  GCTTGCTTAG TATTCAGCGC CCTGAGTTCT AGCTTCAACA CTGCCAAGAA GAAGAAACCA
  AAGAATTGGC ATTGGAGATG GGCATCGGGG GAGCCCCGAA GCTCTCCCCA GGACCTTTCA
  S
  CCAGAGAACA TTAAAGATTC GGGCACAGGC TCTGAGAGGG AAGCTGAGTT CTACTTCATT
  CTCCACCTTC TCTGGCAAGC CTCCAAGTCA GGAAAAACTC ACCCCACCAT AGTTGGAGCT
  GATCTCCTTA GAACAAGAGA ATTACTGAGA TGAAAGCCCT TACCCCATGC GTGTGTTGGC
  AGGCATCAGT GTGTAATGTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321092831	CHEV_4_41442963	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221577542					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:41495930 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14157	CpG island 14157	1459 bp proximal
Myorg	myogenesis regulating glycosidase (putative)	within coordinates
Tssr41339	transcription start site region 41339	389 bp downstream