rs221577880 SNP Detail

Summary

• ID
  rs221577880
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:101168098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCAAGTTT CTTGCTTCCC
  TTACTGACCC CTCCTCCTCC CTCCTTTGTG TCTCCTCCCT CTCCAGAGAT GCCCTGTATT
  CAAGCTCAAT ATGGAACACC AGCAACGAGC CCAGGACCGC GTGACCACCT GACCGGTGAT
  CCCCTGGCCC TTGAGTTCGG CAAGCCTACC ATGGACCTGG CCAGCCCCGA GACAGCACCT
  R
  CCGCACCTGC TACACTGCCC AGCTTCAGCA CCTTCATGGA CGGGTACACC GGAGAGTTTG
  ACACCTTCCT CTACCAGCTG CCGGGGACGA CCCAGCCGTG CTCCTCAGCT TGTTCCTCTG
  CCTCCTCCAC GTCTTCTTCC TCATCCTCGG CCACCTCCCC CGCTTCGGCG TCCTTCAAGT
  TTGAGGACTT CCAGGTGTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss395192990	MGP_WTSI_15_101100648	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	A	G	G	G	A	A	G	A	A	A	G	G	A	G	G	G	G	G	G	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs221577880					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	A	G	G	G	A	A	G	A	A	A	G	G	A	G	G	G	G	G	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395192990	MGP_WTSI_15_101100648	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101168098 () rs orientation: forward

Symbol	Name	Function Class
Nr4a1	nuclear receptor subfamily 4, group A, member 1	within coordinates
Rr510002	regulatory region 510002	1645 bp distal
Tssr133222	transcription start site region 133222	801 bp downstream
Tssr133223	transcription start site region 133223	111 bp downstream
Tssr133224	transcription start site region 133224	93 bp downstream
Tssr133225	transcription start site region 133225	77 bp downstream
Tssr133226	transcription start site region 133226	59 bp downstream
Tssr133227	transcription start site region 133227	46 bp downstream
Tssr133228	transcription start site region 133228	30 bp downstream
Tssr133229	transcription start site region 133229	within coordinates
Tssr133230	transcription start site region 133230	49 bp upstream
Tssr133231	transcription start site region 133231	81 bp upstream
Tssr133232	transcription start site region 133232	100 bp upstream
Tssr133233	transcription start site region 133233	128 bp upstream
Tssr133234	transcription start site region 133234	146 bp upstream
Tssr133235	transcription start site region 133235	179 bp upstream
Tssr133236	transcription start site region 133236	228 bp upstream
Tssr133237	transcription start site region 133237	250 bp upstream
Tssr133238	transcription start site region 133238	283 bp upstream
Tssr133239	transcription start site region 133239	325 bp upstream
Tssr133240	transcription start site region 133240	417 bp upstream
Tssr133241	transcription start site region 133241	434 bp upstream
Tssr133242	transcription start site region 133242	442 bp upstream
Tssr133243	transcription start site region 133243	468 bp upstream
Tssr133244	transcription start site region 133244	489 bp upstream
Tssr133245	transcription start site region 133245	533 bp upstream
Tssr133246	transcription start site region 133246	558 bp upstream
Tssr133247	transcription start site region 133247	646 bp upstream
Tssr133248	transcription start site region 133248	666 bp upstream
Tssr133249	transcription start site region 133249	1517 bp upstream
Tssr133250	transcription start site region 133250	1551 bp upstream
Tssr133251	transcription start site region 133251	1582 bp upstream
Tssr133252	transcription start site region 133252	1929 bp upstream
Tssr133253	transcription start site region 133253	1940 bp upstream
Tssr133254	transcription start site region 133254	1960 bp upstream
Tssr133255	transcription start site region 133255	1993 bp upstream
Tssr136545	transcription start site region 136545	82 bp downstream
Tssr136546	transcription start site region 136546	204 bp downstream
Tssr136547	transcription start site region 136547	280 bp downstream
Tssr136548	transcription start site region 136548	290 bp downstream
Tssr136549	transcription start site region 136549	324 bp downstream
Tssr136550	transcription start site region 136550	430 bp downstream
Tssr136551	transcription start site region 136551	506 bp downstream