rs221580042 SNP Detail

Summary

• ID
  rs221580042
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66206899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGGTAATC TGAGGCCTGG
  AGACCATTAG AGGCTCAGCC TCCAAACGTT ATATGAATAA GAAACTGAAG CCCTTTGGCT
  TTTCCAGAAT TTCTGGGCCC AGTTTTAAAA ATGGTGCTGG TGCTGTTTTT AAAGGAAGAA
  GTTAGGAATT CAAGAGTCTA TACAAGTTCT CTTAACAGGA TCATACAATT TAGTGCCCGA
  Y
  CCTGTGAGAA TAGTAAAACA AACTGCAAAT GGTAGTCAAT CAATGGAATA TTAGGCAGCA
  GCAAATGTGT GACTTTTAAA AATATTTAAA AACAGGACCT ATGAAGGGAT GGTTTATAAA
  AATGCATTGG AAAAAAATGG AGAAAATACG CCACAATGGG AGAGGCTATG TTTTCCTACT
  AGATAAGGAG GTCCTTGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391367294	MGP_WTSI_14_66588287	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221580042					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391367294	MGP_WTSI_14_66588287	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66206899 () rs orientation: forward

Symbol	Name	Function Class
Clu	clusterin	within coordinates
Cpgi6638	CpG island 6638	352 bp distal
Rr290025	regulatory region 290025	899 bp distal
Rr297400	regulatory region 297400	within coordinates
Rr297401	regulatory region 297401	1701 bp proximal
Tssr126237	transcription start site region 126237	940 bp downstream
Tssr126238	transcription start site region 126238	926 bp downstream
Tssr126239	transcription start site region 126239	911 bp downstream
Tssr126240	transcription start site region 126240	892 bp downstream
Tssr126241	transcription start site region 126241	883 bp downstream
Tssr126242	transcription start site region 126242	853 bp downstream
Tssr126243	transcription start site region 126243	843 bp downstream
Tssr126244	transcription start site region 126244	825 bp downstream
Tssr126245	transcription start site region 126245	799 bp downstream
Tssr126246	transcription start site region 126246	793 bp downstream
Tssr126247	transcription start site region 126247	264 bp upstream
Tssr126248	transcription start site region 126248	291 bp upstream
Tssr126249	transcription start site region 126249	351 bp upstream
Tssr126250	transcription start site region 126250	1078 bp upstream
Tssr126251	transcription start site region 126251	1136 bp upstream
Tssr126252	transcription start site region 126252	1144 bp upstream
Tssr126253	transcription start site region 126253	1160 bp upstream
Tssr126254	transcription start site region 126254	1178 bp upstream
Tssr126255	transcription start site region 126255	1211 bp upstream
Tssr126256	transcription start site region 126256	1434 bp upstream
Tssr126257	transcription start site region 126257	1599 bp upstream
Tssr126258	transcription start site region 126258	1663 bp upstream
Tssr126259	transcription start site region 126259	1714 bp upstream